Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29c03
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical ... 50 1e-06
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 28 3.9
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 28 3.9
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 28 3.9
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 28 3.9
AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine r... 28 3.9
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 27 5.1
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 27 5.1
AF003740-6|AAK68240.1| 238|Caenorhabditis elegans Hypothetical ... 27 6.8
U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger ... 27 9.0
U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger ... 27 9.0
AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H... 27 9.0
AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H... 27 9.0
>AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical
protein Y57E12AM.1 protein.
Length = 79
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +3
Query: 117 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVA 296
++I M RYT+P+N A P A F + +VTSTK +R++ KEL ++ +
Sbjct: 1 MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60
Query: 297 AXXXXXXXXXXXXWVGIYV 353
+ WVGIYV
Sbjct: 61 SVFLGFGSVFLLLWVGIYV 79
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 154 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNE 29
+ D +I+ + R + ERNTIEN+ T Q Q L NE
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNE 1402
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 94 ERNTIENKTNKTRQTQRSLRNEVIRM 17
ER I ++++ R+TQRSL+ +V M
Sbjct: 488 EREKIRRESDELRETQRSLKGDVAAM 513
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 154 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNE 29
+ D +I+ + R + ERNTIEN+ T Q Q L NE
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNE 1402
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 94 ERNTIENKTNKTRQTQRSLRNEVIRM 17
ER I ++++ R+TQRSL+ +V M
Sbjct: 488 EREKIRRESDELRETQRSLKGDVAAM 513
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 154 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNE 29
+ D +I+ + R + ERNTIEN+ T Q Q L NE
Sbjct: 1123 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNE 1162
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 94 ERNTIENKTNKTRQTQRSLRNEVIRM 17
ER I ++++ R+TQRSL+ +V M
Sbjct: 248 EREKIRRESDELRETQRSLKGDVAAM 273
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 154 IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNE 29
+ D +I+ + R + ERNTIEN+ T Q Q L NE
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNE 1402
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 94 ERNTIENKTNKTRQTQRSLRNEVIRM 17
ER I ++++ R+TQRSL+ +V M
Sbjct: 488 EREKIRRESDELRETQRSLKGDVAAM 513
>AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 56 protein.
Length = 321
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 305 FWFRYFVLVAMGRDLCVIS 361
FWFRY+VLV+ G C+ S
Sbjct: 142 FWFRYYVLVSFG--FCIYS 158
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 194 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGGRLIFWFRYFVLVAM 337
+N+++L L R +Y S ++ ++ +TFI+G +I W ++VL +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 194 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGGRLIFWFRYFVLVAM 337
+N+++L L R +Y S ++ ++ +TFI+G +I W ++VL +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570
>AF003740-6|AAK68240.1| 238|Caenorhabditis elegans Hypothetical
protein C41D11.5 protein.
Length = 238
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 175 CGKTAGFIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQR 44
CG T + D R I+R +FM + N+TNKT + R
Sbjct: 133 CGDTCAELNDFER--RKINRDLFMHSCSKEQQSNETNKTNKNHR 174
>U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger
protein 4, isoform b protein.
Length = 684
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 211 SRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFL-VSVFCSCCYG*GFMCDINVRYNLSYE 387
S+ GSS ++ + + SY H + YF+ V+VFC Y C ++ YNL
Sbjct: 319 SKTGSSLSESCIFFYLGVSLVSY-NHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFAS 377
Query: 388 *CNTIP 405
N IP
Sbjct: 378 EKNRIP 383
>U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger
protein 4, isoform a protein.
Length = 749
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 211 SRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFL-VSVFCSCCYG*GFMCDINVRYNLSYE 387
S+ GSS ++ + + SY H + YF+ V+VFC Y C ++ YNL
Sbjct: 384 SKTGSSLSESCIFFYLGVSLVSY-NHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFAS 442
Query: 388 *CNTIP 405
N IP
Sbjct: 443 EKNRIP 448
>AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H
exchanger isoform 4b protein.
Length = 684
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 211 SRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFL-VSVFCSCCYG*GFMCDINVRYNLSYE 387
S+ GSS ++ + + SY H + YF+ V+VFC Y C ++ YNL
Sbjct: 319 SKTGSSLSESCIFFYLGVSLVSY-NHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFAS 377
Query: 388 *CNTIP 405
N IP
Sbjct: 378 EKNRIP 383
>AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H
exchanger isoform 4a protein.
Length = 749
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 211 SRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFL-VSVFCSCCYG*GFMCDINVRYNLSYE 387
S+ GSS ++ + + SY H + YF+ V+VFC Y C ++ YNL
Sbjct: 384 SKTGSSLSESCIFFYLGVSLVSY-NHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFAS 442
Query: 388 *CNTIP 405
N IP
Sbjct: 443 EKNRIP 448
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,458
Number of Sequences: 27780
Number of extensions: 193172
Number of successful extensions: 548
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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