Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c03
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   3.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.8  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 233 VNEEPGREEYSYSEQQKG*MWKNCRVY 153
           + E   RE YS S +++   +KN R Y
Sbjct: 263 LEERTSRERYSRSREREQKSYKNEREY 289


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 150 ATCTGSLIQFRDSFLWLF*NE 88
           A C  + +Q  D   WLF +E
Sbjct: 231 AQCEATTMQENDKMSWLFESE 251


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 84  VFRSKIAIKMSLEIESMIRY 143
           +FR  + I+   EI+ ++RY
Sbjct: 463 LFRINLGIECGYEIKKLLRY 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,666
Number of Sequences: 438
Number of extensions: 2572
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)