Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c02
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   1.3  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   2.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   3.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   3.9  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   6.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.7  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 69   CERTMLWSDSDISYNKEKGSLNNGGARLMCRIERYLALI 185
            CE+ +  S S + + K     NN    ++C IER L +I
Sbjct: 893  CEKYLKGSCSRLEFRKYLQKFNNETCYMICSIERLLKVI 931


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 5   KFPVFDCHVIFLQFF 49
           K P+F CHV  +Q+F
Sbjct: 660 KIPIFKCHVAIVQYF 674


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -3

Query: 326 LPVITMVFNYLRL---PYWKGLRST 261
           LPVI ++ NYL L   P+W  +R +
Sbjct: 836 LPVIVLIANYLGLMDGPFWNTIRGS 860


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 183 IEQGNVWMRLLQNIKFLFIY 242
           I + N+ + +LQN++ LF+Y
Sbjct: 759 IRKANIMIPILQNVQMLFVY 778


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 230  FIYLFGRKDLWSTEGLSSKAGED 298
            F + F +  LW +E L++  GED
Sbjct: 1027 FEFYFKKDSLWQSEDLAAVVGED 1049


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 160 VSNAILH*SNREMYGCDYYKILSFYLFIWKE 252
           V  +IL  + +E+ GCD+  ++S+YL +  E
Sbjct: 218 VKLSILEKALKEVKGCDHEILVSYYLQLGSE 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,322
Number of Sequences: 5004
Number of extensions: 32778
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)