Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29b22
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68303-3|CAA92638.1| 248|Caenorhabditis elegans Hypothetical pr... 31 0.58
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 31 1.0
AF000191-4|AAB52881.2| 362|Caenorhabditis elegans Hypothetical ... 29 4.1
Z70279-6|CAA94244.2| 720|Caenorhabditis elegans Hypothetical pr... 28 5.4
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL023841-4|CAC42359.1| 720|Caenorhabditis elegans Hypothetical ... 28 5.4
U39851-4|AAZ32803.1| 572|Caenorhabditis elegans Hypothetical pr... 28 7.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 7.1
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 28 7.1
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 28 7.1
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 28 7.1
U23521-4|AAC46816.4| 389|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 7.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 7.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 7.1
>Z68303-3|CAA92638.1| 248|Caenorhabditis elegans Hypothetical
protein ZK809.2 protein.
Length = 248
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 529 LIESPRREF-SRSNHFDIGSDPLIWCVWSFFSFPRY 425
++E+P + + SNH DPL+WC+ F F RY
Sbjct: 30 ILENPNQPLITVSNHRSNIDDPLMWCILKFREFWRY 65
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 30.7 bits (66), Expect = 1.0
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Frame = +2
Query: 167 KKVDEATSNSSLSNLRYVITEKPKWKVFKKREAVAIPAYTALKPLKGC--PCGNSGPCKQ 340
+KV ++++ V P KV K+E +P P K P + P ++
Sbjct: 234 RKVPALKKKEPSTSVKPVSDPSPTKKVPVKKEP-EVPPTPIKNPTKKWKPPWEDETPVEE 292
Query: 341 KVTPKGVTIHYPQKKKKFSAFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRP-RKF-PT 514
P P KKK A K+R P K P+ V P V P +K+ P
Sbjct: 293 VKEPPVPEKKAPVLKKKDPAPAAKARDPSPSKAAPKKVEPSSPVVPPTPVKNPVKKYKPP 352
Query: 515 WRLD 526
W +D
Sbjct: 353 WEVD 356
>AF000191-4|AAB52881.2| 362|Caenorhabditis elegans Hypothetical
protein T23C6.5 protein.
Length = 362
Score = 28.7 bits (61), Expect = 4.1
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = -2
Query: 676 IYFIGLESKNIIRLFLIFSTISL*ITK-----RHSKLTIRPRSNDWCSVGVIRNLIESPR 512
I FI + ++ L I++TI L ++K +HS + PRS+ W S + R
Sbjct: 189 INFIVWYAVPLVILLCIYATIGLVVSKAATITKHSANKLLPRSS-WRSEASTGGVSVEKR 247
Query: 511 REFSRSNHFDIGSDPLIWCVWSFFSFPRYV 422
R+ R +G I ++FFS PRYV
Sbjct: 248 RKVGR---LAVG----IVVAFAFFSLPRYV 270
>Z70279-6|CAA94244.2| 720|Caenorhabditis elegans Hypothetical
protein K11E8.1c protein.
Length = 720
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 437 TEKGPYAPNQRVTPNVKVIRPRKFPTWRLDKISYNTYRTP 556
T P +P V PNV + P+KFP + + + Y +P
Sbjct: 339 TSSQPTSPAAEVYPNVLLFNPQKFPRNCVHPFTTHPYYSP 378
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 341 KVTPKGVTIHYPQKKKKFSAFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRKFPT 514
K + K V + K+ KF N + E+G + N V NVKV++ RK PT
Sbjct: 86 KPSAKMVLVAECAKEIKFDVRDEDQAYNFDDEPEEGTSSSNSYVPTNVKVVK-RKTPT 142
>AL023841-4|CAC42359.1| 720|Caenorhabditis elegans Hypothetical
protein K11E8.1c protein.
Length = 720
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 437 TEKGPYAPNQRVTPNVKVIRPRKFPTWRLDKISYNTYRTP 556
T P +P V PNV + P+KFP + + + Y +P
Sbjct: 339 TSSQPTSPAAEVYPNVLLFNPQKFPRNCVHPFTTHPYYSP 378
>U39851-4|AAZ32803.1| 572|Caenorhabditis elegans Hypothetical
protein C23G10.7b protein.
Length = 572
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 80 KKQRTDSGSDKNYQLQNKMGLVN-SKDFLKKKVDEATSNSSLSNLRY-VITEKPKWKVFK 253
KK D L+N+ + + S + KKV +AT+ L + R V+ ++ WK K
Sbjct: 485 KKLMKDQDGGLQTFLRNQHQIFHVSTTAIDKKVYQATAR--LRDFRQPVVQKRQSWKPKK 542
Query: 254 KREAVAIPAYTALKPLKGCPCG 319
P + +L GCP G
Sbjct: 543 AETIRKAPCWMSLHHPDGCPVG 564
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Frame = +2
Query: 224 TEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIH--YPQKKKKFS 397
T+K K E P P+K P K++ +P+ V P KK+K
Sbjct: 1756 TKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSPEKVEEKPASPTKKEKTP 1815
Query: 398 AFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRK 505
P K EK P +P ++ K P K
Sbjct: 1816 EKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEK 1851
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 176 DEATS-NSSLSNLRYVITEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSG 328
DEA S N + LR ++TE + K +A + ++TA + K NSG
Sbjct: 303 DEAVSQNPEVQRLRSILTEGDEGSETPKSDAHKVRSHTATRSRKHTMTSNSG 354
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 176 DEATS-NSSLSNLRYVITEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSG 328
DEA S N + LR ++TE + K +A + ++TA + K NSG
Sbjct: 248 DEAVSQNPEVQRLRSILTEGDEGSETPKSDAHKVRSHTATRSRKHTMTSNSG 299
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 176 DEATS-NSSLSNLRYVITEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSG 328
DEA S N + LR ++TE + K +A + ++TA + K NSG
Sbjct: 303 DEAVSQNPEVQRLRSILTEGDEGSETPKSDAHKVRSHTATRSRKHTMTSNSG 354
>U23521-4|AAC46816.4| 389|Caenorhabditis elegans Hypothetical
protein F41C3.11 protein.
Length = 389
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 330 LANKKSRPKESQYIIRRKKRNFPHSAQNLDGT 425
L NKK +PK+ ++RRK P ++N+ T
Sbjct: 82 LRNKKKKPKQVHPVLRRKDVGVPVISENVKET 113
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Frame = +2
Query: 224 TEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIH--YPQKKKKFS 397
T+K K E P P+K P K++ +P+ V P KK+K
Sbjct: 1756 TKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSPEKVEEKPASPTKKEKTP 1815
Query: 398 AFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRK 505
P K EK P +P ++ K P K
Sbjct: 1816 EKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEK 1851
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Frame = +2
Query: 224 TEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIH--YPQKKKKFS 397
T+K K E P P+K P K++ +P+ V P KK+K
Sbjct: 1756 TKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSPEKVEEKPASPTKKEKTP 1815
Query: 398 AFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRK 505
P K EK P +P ++ K P K
Sbjct: 1816 EKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEK 1851
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Frame = +2
Query: 224 TEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIH--YPQKKKKFS 397
T+K K E P P+K P K++ +P+ V P KK+K
Sbjct: 1756 TKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSPEKVEEKPASPTKKEKTP 1815
Query: 398 AFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRK 505
P K EK P +P ++ K P K
Sbjct: 1816 EKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEK 1851
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,216
Number of Sequences: 27780
Number of extensions: 353664
Number of successful extensions: 990
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -