Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29b21
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    31   0.15 
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   3.3  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   3.3  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   5.7  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   5.7  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    25   7.5  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   9.9  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   9.9  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 605 FSFGISLKRKREGKPRIF*GSAQRR*PPISI--SGILIRPRCPTPGRWRELRLKISGGSA 432
           FS   +LK     KP +F GS+QRR    +I  S I +      PG   EL  K  G  +
Sbjct: 439 FSRTNALKTLYGSKPHVFSGSSQRRATGKNIHESAIALFSLHDVPGLMEELIYKSRGRGS 498

Query: 431 DGSGRRTQLLIPSN 390
               R +QL  PS+
Sbjct: 499 PKGFRGSQLKYPSS 512


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = -1

Query: 408 AVNPVKRFIVKSLGLSATFGPVFLIINGNS-------GMMYISCT 295
           A+  +K+F + SLGL+    PV L+++           M++++CT
Sbjct: 33  AIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 397  GINSCVRLPEPSALPPDIFKRSS 465
            G  SCV + +P+ LPP +  ++S
Sbjct: 1533 GCESCVMVGDPNQLPPTVLSKTS 1555


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 263 IVASNRRPWPIL*QHFLFPSGNQRI 189
           +V ++ RP P+  QH+LFPSG+  I
Sbjct: 365 VVYTDFRPTPL--QHYLFPSGSDGI 387


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 429 RFWKANAAVNPVKRFIVKSLGLSATFGPVFL 337
           RF +  +  NP   F V SLGL + F  +FL
Sbjct: 102 RFIEPPSVSNPTLMFFVGSLGLLSNFVGIFL 132


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 83  NRLQSRTKMETFKFSNDKKHVTEAVFNGSVFYEVYKY 193
           N++++   M T  F+ND++ +     N SV Y+ Y Y
Sbjct: 74  NKIKNLFTMFTCCFANDEEEIWGEETNESVVYKEYTY 110


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 408 LRSPSRTVGASPRYFQAKLTPS 473
           L SP+R VG  P+YF A   P+
Sbjct: 245 LGSPARDVGPVPQYFGALTNPN 266


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 352 ERGAQAKRFHNKSFDGINSCVRLPEPSALPPDIFKRS 462
           E    A+RFH++S D     VR    S  P    KRS
Sbjct: 503 EPSLDAERFHSRSVDASPKAVRRESRSFFPSLTRKRS 539


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 235 GQGLRFEATIEGSQAGAVHQSTRYVHHSRVAVND*KNRAERGAQAKR 375
           G    F A    ++ GA+  + R++  ++  +N+  +  E G +AKR
Sbjct: 315 GLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKR 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,472
Number of Sequences: 5004
Number of extensions: 61895
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)