Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29b21
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475... 29 2.6
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 29 2.6
03_06_0373 + 33468711-33468917,33469020-33469217 29 3.4
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331... 29 3.4
08_02_0613 - 19330124-19331587 28 5.9
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256... 28 5.9
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 28 7.8
10_08_0897 - 21419639-21420633,21420826-21421153 28 7.8
08_02_1166 - 24835622-24835707,24835811-24835916,24836616-24836942 28 7.8
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380... 28 7.8
>03_06_0372 +
33446153-33446665,33446744-33446993,33447347-33447501,
33447593-33447805,33447926-33448113,33448282-33448540
Length = 525
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 355 RGAQAKRFHNKSFDGINSCVRLPEPSALPPDIFKRS 462
+G +H FDG SC +P+ AL P + K S
Sbjct: 141 KGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNS 176
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 241 GLRFEATIEGSQAGAVHQSTRYVHHSRVAVND*KNRAE-RGAQAKRFHNKSFDGINSCVR 417
GLR A +G G H +++ R + +G +H FDG SC
Sbjct: 112 GLRVVAWFDGGGGGEWRVVDDACPHRLAPLSE--GRVDGKGRLQCAYHGWCFDGHGSCQF 169
Query: 418 LPEPSALPPDIFKRS 462
+P+ AL P + K S
Sbjct: 170 IPQAPALGPPVHKNS 184
>03_06_0373 + 33468711-33468917,33469020-33469217
Length = 134
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 376 FHNKSFDGINSCVRLPEPSALPPDIFKRS 462
+H FDG SC +P+ AL P + K S
Sbjct: 46 YHGWCFDGHGSCQFIPQAPALGPPVHKNS 74
>03_06_0370 +
33431696-33432217,33432521-33432796,33433003-33433183,
33433253-33433455,33433545-33433732,33433844-33434105
Length = 543
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 376 FHNKSFDGINSCVRLPEPSALPPDIFKRS 462
+H FDG SC +P+ AL P + K S
Sbjct: 151 YHGWCFDGHGSCQFIPQAPALGPPVHKNS 179
>08_02_0613 - 19330124-19331587
Length = 487
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +1
Query: 403 NSCVRLPEPSALPPDIFKRSSRHRPGVGQ-----RGRIKMPLILIGGQRR*ALP*NIRGL 567
N V LP PS LPP+ S H + GR+ ++LIG + R +
Sbjct: 202 NRWVELP-PSTLPPEHGINSGLHYDDLDDDASSGTGRLDFTVVLIGCRHRRVVVETFTSA 260
Query: 568 PSRLRFKEIPNEKT 609
R KE+P + T
Sbjct: 261 TGRWETKELPEQGT 274
>03_01_0329 +
2558726-2559112,2559214-2559449,2559537-2559663,
2560190-2560326,2560467-2560626,2560828-2561106,
2561750-2561920,2562636-2562717,2563397-2563623,
2563682-2563727,2564199-2564281,2564376-2564492,
2564965-2565036
Length = 707
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 352 ERGAQAKRFHNKSFDGINSCVRLPEPSALPPD 447
E G +H SFDG +C R+P+ + P+
Sbjct: 135 ETGCLQCSYHGWSFDGSGACTRIPQAAPEGPE 166
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Frame = +3
Query: 51 KTIKYIY-LVCSTDYRAGQKWRHSNFRMIKNTS-PKLYLT-----GQCSMKFTN 191
K IK++ L+ ++ RAG+KW S F K S P+ +++ G S++FTN
Sbjct: 161 KGIKFMSPLIIDSEERAGEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTN 214
>10_08_0897 - 21419639-21420633,21420826-21421153
Length = 440
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Frame = +3
Query: 51 KTIKYIY-LVCSTDYRAGQKWRHSNFRMIKNTS-PKLYLT-----GQCSMKFTN 191
K IK++ L+ ++ RAG+KW S F K S P+ +++ G S++FTN
Sbjct: 161 KGIKFMSPLIIDSEERAGEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTN 214
>08_02_1166 - 24835622-24835707,24835811-24835916,24836616-24836942
Length = 172
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 427 PSALPPDIFKRSSRHRPGVGQRGRIKM 507
PSA PP RSS+ G RGR+++
Sbjct: 23 PSAAPPRAGTRSSKSAAAAGVRGRVRV 49
>04_03_0655 +
18436363-18436901,18436984-18437772,18437952-18438028,
18438034-18438248
Length = 539
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 485 PTPGRWRELRLKISGGSADGSGRRTQLLIP 396
P PG R + GG AD RR LL+P
Sbjct: 234 PRPGGGRATAIVGGGGGADHGARRRALLVP 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,729
Number of Sequences: 37544
Number of extensions: 401570
Number of successful extensions: 1060
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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