Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29b19
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 33 0.055
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 29 0.67
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 28 1.6
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 2.1
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.1
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.1
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.7
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.6
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 4.7
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 4.7
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 8.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.3
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 25 8.3
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.055
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 138 KKILFVPSSIKLLMSNVNNISKMGAKDKNLRLICSTPEQNNNS 266
+++LF I++ + + NI+ +G D+NL +CS NS
Sbjct: 193 ERLLFRQQEIQIALQMIRNINDLGTPDENLPFLCSVDSSFYNS 235
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 177 MSNVNNISKMGAKDKNLRLICSTPEQNNNSPSRDSDSLYDSDATSPVP 320
++N++ ISK+G +DK LR+ ++NSPS + +Y D + +P
Sbjct: 73 LANLDLISKLGIEDKLLRI-------SSNSPSAKNRYIYYPDRLNEIP 113
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 180 SNVNNISKMGAKDKNLRLICSTPEQNNNSPS 272
SN+ ++ KD N ST + NNNSP+
Sbjct: 673 SNIQKMNSYHIKDSNKENFLSTTKVNNNSPT 703
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 606 SGSEEDLFSDSSDYSPKKWTKNXN 677
+ +EE+ F+ ++D+ PK+W N
Sbjct: 386 TATEEEYFTHATDFDPKRWNDRVN 409
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 249 EQNNNSPSRDSDSLYDSDATSPVPFLCTQDGADGETDVVWNFYTPKADRNKIHDKNA 419
E + S +S+S + D T PVP D +D + D +I KNA
Sbjct: 186 ENEDESSQDESESEEEDDITEPVPSFANISTQDFNSDSAAGSSDSEEDEEEIAKKNA 242
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = +3
Query: 153 VPSSIKLLMSNVNNISKMGAKDKNLRLICSTPEQNNNSPSRDSDSLYDSDATSPVP 320
V S+K L + +S A+ + C+T N N D DS P P
Sbjct: 289 VSVSVKALENGNEEVSNNHARSPHSSRACNTIPSNKNDGLNDDHQRQDSSVAEPSP 344
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 124 ISRLMFVSFVSFYLQRCFVEINYNWW 47
++ + VS ++ Y Q C NYNWW
Sbjct: 532 VTTCIMVSIITVYFQLC--SENYNWW 555
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 402 IHDKNATPIGRKAKRIQRPKLIDKHISK 485
+H + ATPI ++ Q+PK I+K+ SK
Sbjct: 151 LHPELATPIFNAIRQAQQPKQINKNDSK 178
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 150 FVPSSIKLLMSNVNNISKMGAKDKNLRLICSTPEQNNNSPSRDSDSLYDSDATSPVPFL 326
F SS+K L S+ + S + ST NNN + D++SL PVP L
Sbjct: 334 FPQSSVKKLDSSFSPTSLPTFTTNSASSGLSTSYTNNNDTTSDNNSLQAVPRLDPVPSL 392
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/75 (18%), Positives = 38/75 (50%)
Frame = +3
Query: 414 NATPIGRKAKRIQRPKLIDKHISKRRALRSTQKRTELFNDLIELNQNLSELIKKNPKESG 593
++T + + K+ +R ++ KH KR+ + ++ + + +L+++ E+I K +
Sbjct: 520 SSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERKK 579
Query: 594 VKTHSGSEEDLFSDS 638
V ++S + S +
Sbjct: 580 VASNSNKYHPIVSSN 594
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 163 ELGTNKIFFQIETISRLMFVSFVSFYLQRCFV 68
+ T + F + I ++F++F FYL RC V
Sbjct: 18 QTNTEILLFALVIILSVIFINFFFFYLCRCCV 49
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 204 MGAKDKNLRLICSTPEQNNNSPSRDSDSLYD 296
MG ++ L+ STP+ N N+P ++ S +D
Sbjct: 117 MGHEEFKSPLLQSTPKPNINNPDNENKSKHD 147
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +1
Query: 295 IQMLLVQFPFYAHKMELTEKLMLCGIFTLRKLIATKFMIKMQHPLVGKLKEFNVQNLLIN 474
I L Q F + L + + CG+ +L + + +VG + + L
Sbjct: 269 IPRFLSQISFRGFDVSLNDSQISCGMSLAHELQDVMSKLAFRKRIVGNVSLDTPLDYLRF 328
Query: 475 IFQNAEHSVQRR 510
IFQ H +Q++
Sbjct: 329 IFQKTLHDIQQK 340
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 471 KHISKRRALRSTQKRTELFNDLIELNQNLSELIKKNPKESGVKTHSGSEED 623
KH+ + +K T L ++L++LN+ + L K KES K + ED
Sbjct: 991 KHLVESEISTREEKITSLRSELLDLNKRVEVL--KEEKESSSKELAKQLED 1039
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 570 KKNPKESGVKTHSGSEEDLFSDSSDYSPKKWTKNXN 677
+K ES + S+ED SDS SPKK K N
Sbjct: 312 QKEGDESSSSDNLDSDEDSSSDSEFSSPKKKKKVGN 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,906
Number of Sequences: 5004
Number of extensions: 60040
Number of successful extensions: 215
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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