Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29b19
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0893 - 29152150-29153156,29153234-29153561,29153645-291538... 38 0.011
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 31 0.70
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 31 1.2
07_03_0437 + 18197454-18197516,18198025-18198078,18198557-18198787 30 1.6
01_06_1186 + 35223272-35224723,35225536-35225610,35226245-352265... 30 1.6
09_01_0019 + 403078-404211 29 2.8
02_02_0293 - 8639826-8639852,8640161-8640361,8641165-8641611,864... 29 2.8
12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320... 29 3.7
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979... 29 4.9
06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268 28 6.5
06_02_0240 + 13397512-13397856 28 6.5
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 28 8.6
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 28 8.6
>04_04_0893 -
29152150-29153156,29153234-29153561,29153645-29153879,
29154149-29154194,29154579-29154711
Length = 582
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +3
Query: 324 LCTQDGADGETDVVWNFYTPKADRNKIHDKNATPIGRKAKRIQRPKLIDKHISKRRALRS 503
LC V+WN +A+ K + ATP A + +P+ D + +R LRS
Sbjct: 502 LCVGIAVAASAAVLWN-KRRRAEEAKQVENVATPASSPATWLDKPRRGDAEVGRRPDLRS 560
Query: 504 TQKRTELFNDLIEL 545
T R+ LF+ +EL
Sbjct: 561 TMHRSILFSFWVEL 574
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 138 KKILFVPSSIKLLMSNVNNISKMGAKDKNLRLICSTPEQNNNSPSRDSDSLYDSDATS 311
KK+L PS K L ++ N+ K+GA+ L+ + NN P S+ Y ATS
Sbjct: 559 KKVLPNPSGFKKL--SIENV-KIGARIGLSELLAQLQDWNNRLPFTSSNDFYSQQATS 613
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +3
Query: 453 RPKLIDKHISKRRALRSTQKRTELFNDLIELNQNLSELIKKNPKESGVKTHSGSEEDLFS 632
RPK K K +A++ QK+T + L N ++ KK+ +S K SGSEED +
Sbjct: 253 RPK--KKKAEKGKAVKR-QKKTTVEKQLS--NSKAKKVAKKDLDKS--KERSGSEEDNSN 305
Query: 633 DSSDYSPKKWTKNXNTTAYGK 695
S++ KK K AYGK
Sbjct: 306 SSAEEDNKK--KRQVAPAYGK 324
>07_03_0437 + 18197454-18197516,18198025-18198078,18198557-18198787
Length = 115
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/86 (26%), Positives = 44/86 (51%)
Frame = +3
Query: 366 WNFYTPKADRNKIHDKNATPIGRKAKRIQRPKLIDKHISKRRALRSTQKRTELFNDLIEL 545
W ++ A R+ K A + ++ ++R K K +K+ A++ KR + + ++
Sbjct: 33 WGAFSVNA-RDVFVAKEAVLQKKISQEMERAKEFTKSGNKQAAMQCL-KRKKYYES--QM 88
Query: 546 NQNLSELIKKNPKESGVKTHSGSEED 623
NQ S ++ N KE + HSG++ED
Sbjct: 89 NQVGSVQLRINTKEKMIADHSGNKED 114
>01_06_1186 +
35223272-35224723,35225536-35225610,35226245-35226585,
35226621-35227005,35227131-35227559
Length = 893
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 459 KLIDKHISKRRALRSTQKRTELFNDLIELNQNLSELIKKNPKESGVKTHSGSEEDLFSDS 638
K++D S R ++ KR+ + +E+N SE N SGV T SGS E S+
Sbjct: 245 KILDSDPSTRISIPRI-KRSTWYRKPVEINAKNSEAATTNSISSGVATTSGSAECSTSEE 303
Query: 639 SDYS 650
+ S
Sbjct: 304 NQGS 307
>09_01_0019 + 403078-404211
Length = 377
Score = 29.5 bits (63), Expect = 2.8
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +3
Query: 402 IHDKNATPIGRKAKRIQRPKLIDKHISKRRAL---RSTQKRTELFNDLIELNQNLSELIK 572
I ++ GRK R + K +H S R R + KR++ +DL E E K
Sbjct: 197 IAERERAKSGRKHSRDEEKKT-SRHRSSSRGRSKHRRSTKRSDTEDDLEE------ERSK 249
Query: 573 KNPKESGVKTHSGSEEDLFSDSSDYSPKKWTKN 671
K+S K H S+ED SDS +K K+
Sbjct: 250 DKKKKSRRKRHERSDEDSESDSDKKRHRKSRKD 282
>02_02_0293 -
8639826-8639852,8640161-8640361,8641165-8641611,
8641726-8641816,8642949-8643949
Length = 588
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +3
Query: 144 ILFVPSSIKLLMSNVNNISKMGAKDKNLRLICSTPEQNNNSPSRDSDSLYDSDATSPVPF 323
IL + L++ + + + K CST N SPS +Y ++ T+P
Sbjct: 341 ILAIDDRFDLILRQIEEYEQRRMESKVTPTTCSTKCPNGGSPSTIERFIYINEGTTPTGV 400
Query: 324 LCTQDGAD 347
L +G D
Sbjct: 401 LELGNGED 408
>12_01_0404 +
3200787-3200898,3201016-3201091,3201442-3201544,
3202109-3202160,3202239-3202333,3202703-3202768,
3202910-3203419,3203598-3203756,3204022-3204321,
3204867-3205193,3205548-3205754,3205978-3206076,
3206193-3206251,3206294-3206639
Length = 836
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 270 SRDSDSLY--DSDATSPVPFLCTQDGADGETDVV-WNFYTPKADRNKIHDKN 416
S DS+ LY DS+ + V QDG DGE D + K NK+ DK+
Sbjct: 96 SEDSECLYYSDSEDGNAVNDCFVQDGLDGENDKMNTEIKKQKKKLNKLMDKD 147
>01_01_1214 -
9793854-9794003,9795418-9795456,9795604-9795702,
9795779-9795907,9796473-9796619,9797513-9797643,
9798497-9798716,9798858-9798951,9799021-9799133,
9799799-9799903,9800008-9800112,9800762-9800849,
9800933-9801054,9801130-9801189,9802313-9802408,
9802506-9802658,9802752-9802838,9803995-9804062,
9804429-9804552,9805057-9805152,9805250-9805359,
9805459-9805573,9806877-9806942,9807260-9807420,
9807927-9808167
Length = 972
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 576 NPKESGVKTHSGSEEDLFSDSSDY-SPKKWTKNXNTTAYGKMC*VQSLLN 722
N ++S + H+ S FS++SDY S ++ + +T Y M SLLN
Sbjct: 16 NSRDSAERAHAESTLKCFSENSDYISQCQYILDNASTPYALMLASSSLLN 65
>06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268
Length = 583
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 243 TPE-QNNNSPSRDSDSLYDSDATSPVPFLCTQDGAD 347
+PE N +SPSR + S+YD + ++P L G D
Sbjct: 108 SPECPNGSSPSRTARSIYDDEGSTPTIILELGGGED 143
>06_02_0240 + 13397512-13397856
Length = 114
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 441 KRIQRPKLIDKHISKRRALRSTQKRTEL 524
+R RP LI H +RR R Q+RT L
Sbjct: 85 RRAPRPPLIVSHTRRRRGERPPQRRTRL 112
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 576 NPKESGVKTHSGSEEDLFSDSSDY-SPKKWTKNXNTTAYGKMC*VQSLLN 722
N ++S + H+ S FS++SDY S ++ + +T Y M SLLN
Sbjct: 16 NSRDSAERAHAESILKCFSENSDYISQCQYILDNASTPYALMLASSSLLN 65
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 616 SLPEWVLTPDSLGFFLINSDKF*FNSIRSLNNSVL 512
SLP WV P G FLIN+D F + R + V+
Sbjct: 721 SLPSWV--PPPAGVFLINTDAAVFQAERQMGVGVV 753
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,373,878
Number of Sequences: 37544
Number of extensions: 311593
Number of successful extensions: 889
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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