Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29b17
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...   251   8e-68
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    31   0.20 
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    29   0.46 
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   4.2  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   5.6  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    26   5.6  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    25   7.4  
SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    25   7.4  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    25   7.4  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   9.8  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.8  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  251 bits (614), Expect = 8e-68
 Identities = 111/177 (62%), Positives = 144/177 (81%)
 Frame = +3

Query: 135 EIAKQGIQFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLLDRVKKV 314
           E+     +FNKDFGQHILKNPL+   ++DK+ L+ +D  LE+GPGTGN+TV++L++ +KV
Sbjct: 16  EVRNTVFKFNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKARKV 75

Query: 315 LACEIDTRLVAELQKRVQGTPYQAKLQILVGDVLKTELPFFDICVANIPYQISSPLVFKL 494
           +A E+D R+ AE+ KRVQGTP + KLQ+++GDV+KT+LP+FD+CV+N PYQISSPLVFKL
Sbjct: 76  IAVEMDPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYFDVCVSNTPYQISSPLVFKL 135

Query: 495 LLHRPFFRCAVLMFQKEFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRP 665
           L  RP  R A+LMFQ+EFA RLVA+PGD LYCRLS N Q+ A V  +MKVGKNNFRP
Sbjct: 136 LQQRPAPRAAILMFQREFALRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRP 192


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query: 195 PLIITSML-DKSGLRPTDVALEIGPGTGNMTVKLL-DRVKKVLACEIDTRLVAELQKR 362
           P+ IT  + D+  +  T + LE+G GTG  T +++    K+++A ++   ++  L+K+
Sbjct: 25  PIGITDWITDEFLIDETSIILELGAGTGKFTPRIIASHPKEIIAVDVYPEMLDVLRKK 82


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 195 PLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLL-DRVKKVLACEIDTRLVAELQKR 362
           P I   + D+  +  T   LE+G G+G +T +++  + K+++A +    ++  L+K+
Sbjct: 22  PQITEWLNDEFSVNETSTILELGAGSGKLTPRIIASQPKEIIAVDTYVEMLDVLKKK 78


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 382 KQNYKFWLEMF*KQNYHFLIYV*QIFHIKLVHL*C 486
           K  + FWL  F   N  FL+++  I H+  ++  C
Sbjct: 19  KNYWHFWLRSFMSNNRKFLVHIHLIPHLNSLYSIC 53


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 300 RVKKVLACEIDTRLVAELQKRV-QGTPYQAKLQILVGDVLKTEL 428
           R+ +++ C I   L +ELQ ++   TP  A+  +L  ++ +T +
Sbjct: 657 RIPEIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSI 700


>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 99  KIKAEKKTRIHKEIAKQGIQFNKDFGQHILKN 194
           KI +E++  I   +AK+G  F K +GQ I  N
Sbjct: 121 KIFSEERVTIEDILAKKGETFKKGYGQVINGN 152


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 111 EKKTRIHKEIAKQGIQF---NKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNM 281
           +  T +   +  +GI+    ++D  +  L + L +   +DK G+    +A  +G  T   
Sbjct: 146 DSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQ 205

Query: 282 TVKLLDRVKKVLACEID 332
              L+  ++ V++C+I+
Sbjct: 206 VYDLIRTLRGVVSCDIE 222


>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 328 ISQANTFFTLSSNLTVILPVPGPISSATS-VGLNPDLSNIEVIISGFFNMC 179
           +    T  TL++ + + L + G  SS TS   L    +N+  I  G+FNMC
Sbjct: 8   VQGTGTLCTLAAWILLALVMTGCQSSTTSKFQLFSLATNVAQINVGYFNMC 58


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 408 DVLKTELPFFDICVANIPYQISSPL 482
           + +K + P +DIC  N PY    P+
Sbjct: 179 EYVKEKKPSYDICTINPPYVYGPPI 203


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 444 IYQKMVILFSKHLQPKFVILLDKEYLAHVFEVQQPILYQFHRLIPFLLCPAI 289
           +Y   +ILF  ++ P  +++  + Y+     +   +L   H L+ FLL   I
Sbjct: 107 LYLTALILFIVNVAPSMLVVKLQNYVQFPRNMHLSVLAASHVLVEFLLAGVI 158


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 331 SISQANTFFTLSSNLTVILPVPGPISSATSVGLN 230
           ++  A TFFT  S++T  +P P  I   ++V  N
Sbjct: 334 TVPNAKTFFTPPSSITQQVPFPSTIIPESTVKEN 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,136
Number of Sequences: 5004
Number of extensions: 52798
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)