Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29b17
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0548 + 19349943-19350290,19350372-19351100                      162   2e-40
10_02_0111 + 5381779-5382117,5382775-5382798                           98   5e-21
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120...    61   7e-10
01_03_0293 + 14742630-14743042,14743073-14743370                       60   2e-09
06_03_0102 - 16662937-16663245                                         57   1e-08
10_02_0112 + 5385660-5385821,5386337-5386876                           33   0.15 
06_01_0227 - 1733119-1734099                                           30   1.9  
01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496     29   4.4  

>07_03_0548 + 19349943-19350290,19350372-19351100
          Length = 358

 Score =  162 bits (394), Expect = 2e-40
 Identities = 81/171 (47%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
 Frame = +3

Query: 156 QFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLLDR-VKKVLACEID 332
           + +K  GQH+L NP ++ +++ ++ LRP D  LE+GPGTGN+TV+LL+    +V A EID
Sbjct: 36  RLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVEID 95

Query: 333 TRLVAELQKRVQGTPYQAKLQILVGDVLKTELPFFDICVANIPYQISSPLVFKLLLHRPF 512
            R+V  +  RV       KL ++  D ++ E P FD+CVANIPY ISSPL+ KLL     
Sbjct: 96  PRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEFDVCVANIPYGISSPLIAKLLFGPYR 155

Query: 513 FRCAVLMFQKEFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRP 665
           FR A L+ QKEFA+RLVA PGD  Y RL+ N +++A   +LM V K +F P
Sbjct: 156 FRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFVP 206


>10_02_0111 + 5381779-5382117,5382775-5382798
          Length = 120

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 45/83 (54%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
 Frame = +3

Query: 150 GIQFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLLDR-VKKVLACE 326
           GI F K  GQHIL+NP ++ S+++K+GL+PTD  LEIGPGTGN+T +LL   VK V+A E
Sbjct: 31  GIPFEKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVE 90

Query: 327 IDTRLVAELQKRVQGTPYQAKLQ 395
           +D R+V EL +R QG P  ++L+
Sbjct: 91  LDPRMVLELNRRFQGDPLASRLK 113


>02_01_0175 -
           1198657-1198737,1199080-1199190,1199488-1199540,
           1200131-1200215,1200519-1200614,1200729-1200821,
           1201640-1201696,1201826-1201975,1202819-1202893
          Length = 266

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 16/186 (8%)
 Frame = +3

Query: 156 QFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLLDRVKKVLACEIDT 335
           Q  K  G++ + N  +   ++  +G+   DV LEIGPGTG++T  LLD    V A E D 
Sbjct: 18  QGTKGDGENYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLDAGATVFAVEKDK 77

Query: 336 RLVAELQKRVQGTPYQAKLQILVGDVLKTE-----LPFFD----------ICVANIPYQI 470
            +   +  R   T    +L+I+  D+ K       LPF +            V+N+P+ +
Sbjct: 78  HMATLVNDRFGST---EQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKYAKVVSNLPFNV 134

Query: 471 SSPLVFKLLLHRPFFRCAVLMFQKEFAQRLV-AKPGDKLYCRLSINTQLLARVDMLMKVG 647
           S+ +V  LL     F   VL+ Q E A R   A      Y  +++     +  +   KV 
Sbjct: 135 STEVVKLLLPMGDVFSVMVLLLQDETALRFADASIQTPEYRPINVFVNFYSEPEYKFKVE 194

Query: 648 KNNFRP 665
           + NF P
Sbjct: 195 RTNFFP 200


>01_03_0293 + 14742630-14743042,14743073-14743370
          Length = 236

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 37/79 (46%), Positives = 46/79 (58%)
 Frame = +3

Query: 423 ELPFFDICVANIPYQISSPLVFKLLLHRPFFRCAVLMFQKEFAQRLVAKPGDKLYCRLSI 602
           ELP FDICVA+IPY ISSPL  KLL+    FR         FA+RL+  PG      L+ 
Sbjct: 4   ELPKFDICVASIPYGISSPLTAKLLIGSHRFRA-------RFARRLMGTPGHGERNLLAT 56

Query: 603 NTQLLARVDMLMKVGKNNF 659
           N +L+A V +LM V +  F
Sbjct: 57  NARLVADVRLLMDVSRPEF 75


>06_03_0102 - 16662937-16663245
          Length = 102

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +3

Query: 150 GIQFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTG 275
           GI F+K  GQHIL+NP ++ S+++K+GL+PTD  LEIG   G
Sbjct: 30  GISFDKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGSARG 71


>10_02_0112 + 5385660-5385821,5386337-5386876
          Length = 233

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +3

Query: 600 INTQLLARVDMLMKVGKNNFRP 665
           +++ LL+RV  L+KVG+NNFRP
Sbjct: 51  LSSSLLSRVSHLLKVGRNNFRP 72


>06_01_0227 - 1733119-1734099
          Length = 326

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 255 EIGPGTGNMTVKLLDRVKKVLACEIDTRLVAELQKRVQGTPYQA 386
           + G GTG++ + L  +   VLA +I   +V+E Q++ +     A
Sbjct: 155 DAGCGTGSLAIPLASQGASVLASDISAAMVSEAQRQAEAAAMAA 198


>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
          Length = 428

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 298 SSNLTVILPVPGPISSATSVGLNPDLSNIEVIISGFFN 185
           SS ++ ++P   P + +TS GLNP   N     +G  N
Sbjct: 257 SSTISTVMPPVSPSTLSTSTGLNPSPDNANSRGTGIHN 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,759
Number of Sequences: 37544
Number of extensions: 287746
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)