Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29b17
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.16 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.0  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 349 SATNLVSISQANTFFTLSSNLTVILPVPGPISSATSVGLNPDLSNIE 209
           S   L S   A+   +LS NL+  L +       TS G+N + SNIE
Sbjct: 522 SLPQLDSTELADLDISLSENLSSGLSISDSTKPETSKGINAEPSNIE 568


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 637 ISISTLANNCVFIDSLQYNLSPGFATNLCANSF*NMSTAHLKKGLCSSNLNTKG 476
           I+ S   +  V  +  QY+L       L    + ++ + +L+KG C+  + T G
Sbjct: 413 IAFSRGCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVG 466


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 276 NMTVKLLDRVKKVLACEIDTRL 341
           N TVK   R+  ++AC+++ +L
Sbjct: 101 NKTVKYSARMHAIIACQMEFQL 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,394
Number of Sequences: 438
Number of extensions: 3477
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)