Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29b08
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 31 0.16
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 29 0.48
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.5
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 26 4.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.9
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 5.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 5.9
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 25 7.8
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +1
Query: 313 IDWTPHAGTTGVRPVVDKYSITRYSTGEWRKNNEYVLTPRATDKARNWETTTKKDLANAF 492
+DW+P + ++ +T+YS G W+ ++ L+ A + W + K ++
Sbjct: 252 LDWSPFEYSLLSGDNANEIFLTKYSNGGWQTDSSPFLSHTAAVEDLQWSPSEKNVFSSCS 311
Query: 493 SGMDNKLADVNNK 531
++ DV NK
Sbjct: 312 CDGTFRIWDVRNK 324
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 45 DDRRPQQNM-PIYLSNNDKTS-RRDYILSGSWNVARSRKPTR 164
DD P+ + P Y NN+ +S R+ +LS + + +RSR+P+R
Sbjct: 683 DDNIPRPGIVPFYNENNESSSDTRNGLLSDNVSESRSRRPSR 724
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 85 PTTIKPAGE--TISYLEAGMSRGPENPHASPYVPGLIQPPEKKIYPPGAPP 231
P PA + + SY+ SRG + +PY P I PP ++ P + P
Sbjct: 179 PAVKSPAAQRRSSSYMVPANSRGSPANYNTPYYPTAIPPPIEEYSPSVSLP 229
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 27.9 bits (59), Expect = 1.5
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Frame = +1
Query: 211 YPPGAPPRYLPQPTDSTSG------DILGMGPI--GPWAPGHIDWT--PHAGTTGVRPVV 360
YP A P + Q +DS+S D G P P PG D+ P + + ++
Sbjct: 322 YPQFAEPISVSQSSDSSSSIPKKSNDEAGGSPSKSSPTRPGFNDYVNRPTSVMPSLSNMI 381
Query: 361 DKYSITRYSTGEWRKNNEYVLTPRATDKARNWETT 465
+ + +W N+YV+ P AT +RN ++T
Sbjct: 382 VSPDLDSSPSTDW---NQYVIPPLATPSSRNSKST 413
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 148 PENPHASPYVPGLIQPPEKKIYPPGAPPRYLPQPTDST 261
P NP P PG +PP + PP PP Y+ + + T
Sbjct: 6 PGNPPPPPPPPG-FEPPSQP--PPPPPPGYVKKRKNKT 40
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 499 MDNKLADVNNKLEKRVKDLSHWKREVEKAVLAITDEINVLDQ 624
M +++ D EK V L + R++E + + T+E+NV Q
Sbjct: 1269 MQSEVCDPTQLSEKDVPLLQFYLRKLEGSEILFTEELNVFRQ 1310
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -1
Query: 305 GAQGPIGPMPRISPLVESVGCG-RYLGGAPGG*IFFSGGCI 186
G GP G MP P+ S+G Y G G + GG I
Sbjct: 145 GFAGPFGAMPGSQPMFPSIGASDLYPAGIGGSDMGNDGGMI 185
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 97 KPAGETISYLEAGMSRGPENPHASPYV-PGLIQPPEKKIYPPGAPPRYLPQP 249
K A + L GM+ P +P ++P V P PP+ P PP +P P
Sbjct: 1668 KDAAALAAKLFGGMA--PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPP 1717
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +1
Query: 154 NPHASPYVPGLIQPPEKKIYPPGAPPRYLPQPTDSTSGDI 273
+PH P V + + +P P + P P+DS + +
Sbjct: 187 SPHVRPAVGATMAGSAMRTFPSNLPLGHPPPPSDSANSSV 226
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 442 KARNWETTTKKDLANAFSGMDNKLADVNNKLEKRVKDLSHWK 567
KA ET +K + + +G + ++D NNK E V + +WK
Sbjct: 1299 KAVEAETKSKSEKSPKKNGTN--ISDANNKNESHVSLMKNWK 1338
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 517 DVNNKLEKRVKDLSHWKREVEKAVL 591
++NNK +RV + W +E E+A+L
Sbjct: 393 NLNNKRTRRVANRRSWTKEEEEALL 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,806
Number of Sequences: 5004
Number of extensions: 68285
Number of successful extensions: 253
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -