Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29b08
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.056
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 145 GPE-NPHASPYVPGLIQPPE-KKIYPPGAPPRYLPQPTDS 258
           GP+ +PH SP  P    PP   +  PPG PP   P    S
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 123 IRYSLSCWFYRCWT-NIWACFAGVFGRHIYK 34
           I Y   CW+  CWT    A   GVF  +I K
Sbjct: 483 IGYYPCCWWKICWTITTPAICVGVFTFNIIK 513


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 123 IRYSLSCWFYRCWT-NIWACFAGVFGRHIYK 34
           I Y   CW+  CWT    A   GVF  +I K
Sbjct: 536 IGYYPCCWWKICWTITTPAICVGVFTFNIIK 566


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 135 SSFQIRYSLSCWFYRCWTNIWACFAG 58
           S   + YS+ C+F + W +    F G
Sbjct: 45  SEVDMTYSMDCYFRQSWVDRRLAFQG 70


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 135 SSFQIRYSLSCWFYRCWTNIWACFAG 58
           S   + YS+ C+F + W +    F G
Sbjct: 77  SELDMDYSMDCYFRQSWRDSRLSFLG 102



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 70  CPYICPTTIKPAGETISYLEAGMSRGPENPHASPY 174
           C Y+    +  AG    YL  GM+    +   SPY
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPY 219


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 187 IQPPEKKIYPPGAPPRYLPQPT 252
           I P   K+Y     P++L QPT
Sbjct: 9   ILPLNPKLYDKHRAPKFLGQPT 30


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 48  DRRPQQNMPIYLSNNDKTSRRDYILSGS 131
           DRR   N P +LS++ +   ++  L+ S
Sbjct: 117 DRRLHDNSPSFLSDHSRDQEQNLYLTPS 144


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 58  PSKTCPYICPTT 93
           P K CP+IC  T
Sbjct: 231 PVKPCPWICELT 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,990
Number of Sequences: 438
Number of extensions: 5399
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)