Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29b07
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    29   0.47 
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    26   5.8  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   7.7  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 148 GRIADDHARGCTQRCHIRTAPTRSAERAEPC 56
           G + DD    C  +CH + A T   +   PC
Sbjct: 351 GSLCDDQQDACCYQCHFKNAGTLCRQSTNPC 381


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 503 VLNCIIKCVR*NSASMFS*IVTFSLPFSDCHHDLTRV 393
           +L  +IKCVR +  S  S    FSL  + C + L  V
Sbjct: 180 ILRLVIKCVRCHYGSEISIATKFSLVCNKCSNTLRLV 216


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 251 VYTNVSGTVSFRISNPNNVF 310
           VY  + G+  F  SNPNN+F
Sbjct: 250 VYQMIVGSPPFHGSNPNNIF 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,825
Number of Sequences: 5004
Number of extensions: 58537
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)