Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29b07
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1395 + 33219711-33220629,33220750-33220787                       31   1.1  
07_01_0912 - 7667548-7667666,7669349-7669568                           29   2.6  
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    28   6.0  
06_03_0162 + 17375237-17375371,17375594-17375836                       28   7.9  

>04_04_1395 + 33219711-33220629,33220750-33220787
          Length = 318

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 136 DDHARGCTQRCHIRTAPTRSAERAEPCRGFG 44
           DD+   C   C +R+A  R A  A  C GFG
Sbjct: 144 DDYISVCAALCVVRSALPRDAAAASSCSGFG 174


>07_01_0912 - 7667548-7667666,7669349-7669568
          Length = 112

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 151 VGRIADDHARGCTQRCHIRTAPTRSAE 71
           +G  A+ H RGC ++ H R  PT  A+
Sbjct: 55  LGGSANQHTRGCEKQLHCRAVPTLEAK 81


>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 372 HLQVLSGNSSQVMVAIGKRQGKRNNSAEHGSRVSSHAF-DNTIQNVS 509
           HL+   G S    V  G  +G R+  +EH   V + +F  NT+++VS
Sbjct: 635 HLRDHFGYSPSEKVVDGSGKGSRSTRSEHEKAVLTESFKQNTVKDVS 681


>06_03_0162 + 17375237-17375371,17375594-17375836
          Length = 125

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 42  EPNPRHGSARSADRVGAVR-MW 104
           +P  RHGSARSADR    R +W
Sbjct: 25  QPMGRHGSARSADRAVPARWLW 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,000,670
Number of Sequences: 37544
Number of extensions: 389136
Number of successful extensions: 1104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)