Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29b03
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    97   2e-21
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    93   4e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    56   4e-09
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    56   6e-09
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   5.8  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
 Frame = +2

Query: 89  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 256
           M+EI+ IH+GQAG Q  NACWELYCLEHGI+P+G +    A  ++D     FFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 257 FVPRVVMIDLEPTPI 301
           +VPR + +DLEP  I
Sbjct: 61  YVPRSIYVDLEPNVI 75



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 27/48 (56%), Positives = 39/48 (81%)
 Frame = +3

Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
           D++RTG YR LFH   LITGKEDA++N+ARG++ VG+E++D   ++IR
Sbjct: 76  DQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIR 123


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 8/79 (10%)
 Frame = +2

Query: 89  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGV-----LAFPDN---DNSCGHFFSET 244
           M+E++ +H+GQAGVQ  NACWELYCLEHGI PDG          +N   ++  G FFSET
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 245 GAGKFVPRVVMIDLEPTPI 301
           G GKFVPR + +DLEP  I
Sbjct: 61  GQGKFVPRSIYVDLEPNVI 79



 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 27/48 (56%), Positives = 39/48 (81%)
 Frame = +3

Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
           D++RTG Y+ LFH   ++TGKEDA++N+ARG++ VG+EM+D  L RIR
Sbjct: 80  DQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIR 127


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 92  KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL-AF-PDNDNSCGHFFSETGAGKFVP 265
           +EI+ +  GQ G Q  +  W+  CLEHGI PDG L +F  +  +    FF ++   +++P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 266 RVVMIDLEP 292
           R ++IDLEP
Sbjct: 63  RAILIDLEP 71


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 89  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL--AFPDNDNSCGHFFSETGAGKFV 262
           M+EI+HI  GQ G Q   A W     EHG+   G+              +F+E   GK+V
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 263 PRVVMIDLEP 292
           PR V++DLEP
Sbjct: 61  PRAVLVDLEP 70


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 108 YTLDKPVCKPLTPVGNCIVLNT 173
           Y LD  + + +TP   CIVLNT
Sbjct: 96  YNLDTAIKEVVTPGHTCIVLNT 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,645
Number of Sequences: 5004
Number of extensions: 56488
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)