Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29b03
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 100 9e-22
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 100 1e-21
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 97 9e-21
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 71 9e-13
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 64 1e-10
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 62 5e-10
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 61 7e-10
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 60 2e-09
03_01_0034 + 318432-318825,318902-319851 58 5e-09
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 58 5e-09
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 58 6e-09
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 57 1e-08
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 52 4e-07
01_07_0127 + 41234826-41236136 29 4.5
10_08_0169 - 15385393-15385583,15388078-15388648 28 7.9
06_02_0239 + 13384451-13387124,13387234-13387631 28 7.9
01_03_0153 + 13255667-13255954,13258383-13258529,13258798-132589... 28 7.9
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 100 bits (240), Expect = 9e-22
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 256
M+E + IHIGQAG+Q NACWELYCLEHGI+PDG + D++ FFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 257 FVPRVVMIDLEPTPI 301
VPR V +DLEPT I
Sbjct: 61 HVPRAVFVDLEPTVI 75
Score = 74.5 bits (175), Expect = 7e-14
Identities = 31/48 (64%), Positives = 42/48 (87%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
DE+RTG YRQLFH LI+GKEDAA+NFARG++ +G+E++D+ L+RIR
Sbjct: 76 DEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 100 bits (239), Expect = 1e-21
Identities = 47/76 (61%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDNDNSCGH-----FFSETGAG 253
M+EI+ IHIGQAG+Q NACWELYCLEHGI PDG + D H FFSETGAG
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMP-SDTTVGVAHDAFNTFFSETGAG 59
Query: 254 KFVPRVVMIDLEPTPI 301
K VPR + +DLEPT I
Sbjct: 60 KHVPRAIFVDLEPTVI 75
Score = 74.9 bits (176), Expect = 5e-14
Identities = 31/48 (64%), Positives = 42/48 (87%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
DE+RTG YRQLFH LI+GKEDAA+NFARG++ VG+E++D+ L+R+R
Sbjct: 76 DEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVR 123
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/75 (60%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 256
M+E + IHIGQAG+Q NACWELYCLEHGI+ DG + D++ FFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPSDRTVGGGDDAFNTFFSETGAGK 60
Query: 257 FVPRVVMIDLEPTPI 301
VPR V +DLEPT I
Sbjct: 61 HVPRAVFVDLEPTVI 75
Score = 74.9 bits (176), Expect = 5e-14
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
DE+RTG YRQLFH LI GKEDAA+NFARG++ +G+E++D+ L+RIR
Sbjct: 76 DEVRTGCYRQLFHPEQLINGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 70.9 bits (166), Expect = 9e-13
Identities = 30/48 (62%), Positives = 41/48 (85%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
DE++TG YRQLFH LI+ KEDAA+NFARG++ VGRE++D+ L+R+R
Sbjct: 136 DEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREVVDLCLDRLR 183
Score = 70.1 bits (164), Expect = 2e-12
Identities = 26/36 (72%), Positives = 33/36 (91%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL 196
M+EI+ IHIGQAG+Q N+CWELYCLEHGI+PDG++
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGLM 36
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 230 FFSETGAGKFVPRVVMIDLEPTPIG*LK 313
FFSET +GK VPR + +DLEPT I +K
Sbjct: 112 FFSETSSGKHVPRALFVDLEPTVIDEVK 139
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Frame = +2
Query: 86 KMKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDN--DNSCGHFFSETGAGKF 259
KM+EILHI GQ G Q + WE+ C EHGI P G A + +++E G+F
Sbjct: 180 KMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGRF 239
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 240 VPRAVLMDLEP 250
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
D +RTG Y Q+F + + G+ A +N+A+G++ G E++D L+ +R
Sbjct: 254 DSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 301
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL--AFPDNDNSCGHFFSETGAGKFV 262
M+EILHI GQ G Q WE+ C EHG+ P G P +F+E G+ V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTGTSPQQLERINVYFNEASGGRHV 60
Query: 263 PRVVMIDLEP 292
PR V++DLEP
Sbjct: 61 PRAVLMDLEP 70
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
D +R+G +F + + G+ A +N+A+G++ G E++D L+ +R
Sbjct: 74 DSLRSGPIGGIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDG-VLAFPDND-NSCGHFFSETGAGKFV 262
M+EILHI GQ G Q + WE+ C EHGI P G + D +++E G+FV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60
Query: 263 PRVVMIDLEP 292
PR V++DLEP
Sbjct: 61 PRAVLMDLEP 70
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
D +RTG Y Q+F + + G+ A +N+A+G++ G E++D L+ +R
Sbjct: 74 DSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDNDN----SCGHFFSETGAGK 256
M+EILHI GQ G Q WE+ C EHGI P G + N + +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTG--RYTGNSDLQLERVNVYYNEASCGR 58
Query: 257 FVPRVVMIDLEP 292
FVPR V++DLEP
Sbjct: 59 FVPRAVLMDLEP 70
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
D +RTG Y Q+F + + G+ A +N+A+G++ G E++D L+ +R
Sbjct: 74 DSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EILHI GQ G Q WE+ C EHGI G D+D +++E G+F
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYD-GDSDLQLERVNVYYNEASCGRF 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLMDLEP 70
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
D +R+G Y +F + + G+ A +N+A+G++ G E++D L+ +R
Sbjct: 74 DSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVR 121
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EILHI GQ G Q WE+ C EHGI G + D+D +++E G+F
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYS-GDSDLQLERINVYYNEASGGRF 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLMDLEP 70
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
D +R+G + Q+F + + G+ A +N+A+G++ G E++D L+ +R
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EILHI GQ G Q WE+ C EHG+ G A D+D +++E G++
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYA-GDSDLQLERINVYYNEASGGRY 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLMDLEP 70
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
D +R+G + Q+F + + G+ A +N+A+G++ G E++D L+ +R
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVLAFPDND---NSCGHFFSETGAGKF 259
M+EILHI GQ G Q WE+ C EHGI G + D+D +++E G++
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYS-GDSDLQLERINVYYNEASGGRY 59
Query: 260 VPRVVMIDLEP 292
VPR V++DLEP
Sbjct: 60 VPRAVLMDLEP 70
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +3
Query: 540 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 683
D +R+G Y Q+F + + G+ A +N+A+G++ G E++D L+ +R
Sbjct: 74 DSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +2
Query: 92 KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL---AFPDNDNSCGHFFSETGAGKFV 262
+EI+ I +GQ G Q W+ CLEHGI DG+L A D FF + ++
Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGGDRK-DVFFYQADDQHYI 61
Query: 263 PRVVMIDLEPTPI 301
PR +++DLEP I
Sbjct: 62 PRALLVDLEPRVI 74
>01_07_0127 + 41234826-41236136
Length = 436
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 561 YRQLFHSSSLITGKEDAASNFARGYFGVG 647
YRQ S +T K S F RG+ G+G
Sbjct: 383 YRQFGCSLEFVTNKSQEGSQFVRGFGGIG 411
>10_08_0169 - 15385393-15385583,15388078-15388648
Length = 253
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 667 ATSNISRPTPK*PRAKLLAASSLPVIREEEWKSCRYTPVLISSES 533
A S+ S P+P P A +L A S+P I S V+ SSES
Sbjct: 192 APSSSSLPSPILPHASILDADSIPRILSLTGDSMEVDEVMGSSES 236
>06_02_0239 + 13384451-13387124,13387234-13387631
Length = 1023
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 258 NFPAPVSLKKCPQLLSLSGNARTPSGLIP 172
N PVS+ KC L SLS + + SG+IP
Sbjct: 535 NGSIPVSIGKCQSLQSLSLSRNSLSGVIP 563
>01_03_0153 +
13255667-13255954,13258383-13258529,13258798-13258932,
13259344-13259461,13260925-13261049,13261407-13261532,
13261617-13261697,13262188-13262250,13262328-13262402,
13263439-13263517,13263627-13263727,13263952-13264065,
13264225-13264338,13264406-13264477,13264561-13264608
Length = 561
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 188 GVLAFPDNDNSCGHFFSETGAGKFVPRVVMID 283
G + FPDN+ + + TG+ FVP + ID
Sbjct: 198 GKVGFPDNEITARNIIIATGSVPFVPNGIEID 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,347
Number of Sequences: 37544
Number of extensions: 327029
Number of successful extensions: 794
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -