Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a19
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   1.5  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   4.6  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   4.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   6.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   8.0  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   8.0  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -3

Query: 456 SCYTRPSSKVFLFLENSTLISLTWGSVIFPVGDAPTALYNATATALSANVTLGCDIAYS 280
           +C++R     F+  + +  + L   +V + +GD    +Y ++   +S NV+ G  +A S
Sbjct: 674 ACFSRLQKFAFVIAQPTPTVELLPNNVPYNLGDLNHPVYWSSFPTISLNVSEGYSLAES 732


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 197 LKSPLATSASAVPFPG-TVQLKRPAAGSEE*AMSQPRVTLAESAVAVALYSAVGASPTGN 373
           + S L T    + F G T Q +   A SE+        TLA S ++  +YS+  AS T +
Sbjct: 85  ISSDLPTDGWQIYFNGATSQNQGSLAQSEQFDFEGSDSTLAASTISGGIYSSTSASSTSS 144

Query: 374 IT 379
            T
Sbjct: 145 ST 146


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 532 ITKNFQALVCFLYSRHVIFY*CRSSELLHQ 443
           +  N+  L+  L +RH +++   SS +LHQ
Sbjct: 93  LADNYDPLLTVLTNRHRVYFFSSSSRVLHQ 122


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 199 EESLGDFGQRGPVPGDGTVEASGGRQR 279
           E S GD+ +RGP+P     E+  G++R
Sbjct: 177 ERSTGDWVRRGPLPPAEPAESPFGKRR 203


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -3

Query: 486  M*YFINVGHLSCYTRPSSKVFLFLENSTLISLTW 385
            M YF+ +G+  C+       +  L N  ++ ++W
Sbjct: 1549 MKYFVEIGNYECFAAILYTCYHLLRNDLVMEISW 1582


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +2

Query: 191 SHLKSPLATSASAVPFPGTVQLKRPAAGSEE*AMSQPRVTLAESAVAVALYSAVGASPTG 370
           SHL+   ATS+S+  +P       PA+ S    +S   V    S  +      V +  T 
Sbjct: 237 SHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKSTD 296

Query: 371 NI 376
           NI
Sbjct: 297 NI 298


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 429 VFLFLENSTLISLTWGSVIFPVGDAPTALYNATATALSANVTLGCDIAYSSLP 271
           V LF++++  I        FPV D  + L      A SA+     D+A   +P
Sbjct: 800 VHLFMDSAAFIVTVKNGSAFPVTDKSSPLLFLAEQAASASEAAAPDLAAIPIP 852


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,581
Number of Sequences: 5004
Number of extensions: 38698
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)