Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29a19
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0821 - 27960414-27961253 29 2.0
10_01_0048 - 659107-660402,661650-661867,662299-662335 29 2.7
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 28 4.7
07_01_0491 + 3701445-3701782,3703000-3704101 28 4.7
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 4.7
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 28 6.2
07_01_0262 + 1957973-1958220,1958272-1958935 28 6.2
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365 28 6.2
03_01_0003 - 5743-6354 28 6.2
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 28 6.2
>03_05_0821 - 27960414-27961253
Length = 279
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 357 APTALYNATATALSANVTLGCDIAY-SSLPAAGRFNCTVPGNGTA 226
A +AL++A ALSA + GC ++ ++ P+A C PG TA
Sbjct: 69 AVSALHSAVLLALSAAMAAGCVLSVAATAPSAWWAFCFPPGGATA 113
>10_01_0048 - 659107-660402,661650-661867,662299-662335
Length = 516
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 230 VPFPGTVQLKRPAAGSEE*AMSQPRVTLAESAVAVALYSAVGASPTGNITEPQVREIKVL 409
+P G V PA A + L ++AVAVA+ S+ A P T QV E+K +
Sbjct: 230 LPHDGFVLYDGPAEEGRRMAHTDQFSFLDKAAVAVAVPSSAAAQPWRLCTVTQVEELKAI 289
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 269 PPDASTVPSPGTGPRWPKSPRDSSDATTCPDALKVLVLCSGRAS 138
PP ST S P P+SP ++ +T +L +L + AS
Sbjct: 76 PPSTSTSSSSAASPPAPESPPEAPCSTRLSSSLASAILAAASAS 119
>07_01_0491 + 3701445-3701782,3703000-3704101
Length = 479
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 450 YTRPSSKVFLFLENSTLISLTWGSVIFPVGDAPTALYNA-TATALSANVTLGCDIAYSSL 274
Y ++ FL N + I++T ++ + AL +A + A V L D+ S++
Sbjct: 114 YVAVGNEPFLKAYNGSFINITLPAL----QNVQNALNDAGIGDRIKATVPLNADVYESTV 169
Query: 273 PAAGRFNCTVPG 238
P+AGRF + G
Sbjct: 170 PSAGRFRPEIAG 181
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +2
Query: 194 HLKSPLATSASAVPFPGTVQLKRPAAGSEE*AMSQPRVT--LAESAVAVALYSAVGASPT 367
H + A S A P G+ P A+ P +A SA A + S+ GASP
Sbjct: 75 HDAAAAAASPGAPPPSGSTPASSPYCALLRAALFGPTTPDRVASSASACSSSSSAGASPV 134
Query: 368 GNITEPQVREIKVLFSRNRK 427
G+ + K RN K
Sbjct: 135 GSPATGNIFRFKAEVPRNAK 154
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 241 GDGTVEASGGRQRGVGDVAAQ 303
GDG V GG + GVGD AA+
Sbjct: 33 GDGDVLGEGGGEAGVGDEAAE 53
>07_01_0262 + 1957973-1958220,1958272-1958935
Length = 303
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 330 ATALSANVTLGCDIAYSSLPAAGRFNCTVPGNGTALAEVAK 208
A++ SA V +GC PAA C++P + A VA+
Sbjct: 89 ASSSSAPVAVGCPTRRRPSPAAAAEKCSLPASPPTTAGVAR 129
>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
Length = 144
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 305 VTLAESAVAVALYSAVGASPTGNITEPQVREIKVLFSRNRKTL 433
+ + E+ V LY + A T + EP+ + + + RNR+TL
Sbjct: 88 IVICETLVGYLLYRMINAGCTWAV-EPEAEQQQCILRRNRRTL 129
>03_01_0003 - 5743-6354
Length = 203
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 187 VVASEESLGDFGQRGPVPGDGTVEASGGRQRGVGDV 294
VVA + LGDFG R P P + +E++ G +R +G+V
Sbjct: 40 VVAMADLLGDFGARDPFPEE--IESNFG-ERVLGNV 72
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 54 LRATILSYQNFN*YY--EVLASRSPLNNHLRSPTAAEDEDF 170
+ L Y N YY VLA++ P+ N+ RSP E DF
Sbjct: 822 MTTVFLRYDNLKIYYPNSVLATK-PIMNYYRSPDMGEGIDF 861
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,206,468
Number of Sequences: 37544
Number of extensions: 280651
Number of successful extensions: 1000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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