Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a19
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83228-9|CAB05737.2|  539|Caenorhabditis elegans Hypothetical pr...    31   0.59 
U67079-1|AAB40716.1|  539|Caenorhabditis elegans C2-HC type zinc...    31   0.59 
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83235-1|CAB05775.1|  174|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U41554-1|AAA83296.2|  556|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    27   7.3  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    27   9.6  
AF039038-4|AAK21430.1|  332|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z83228-9|CAB05737.2|  539|Caenorhabditis elegans Hypothetical
           protein F52F12.6 protein.
          Length = 539

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 191 SHLKSPLATSASAVPFPGTVQLKRPAAGSEE*AMSQPRVTLAESAVAVALYSAVGASPTG 370
           S  KSP+ TS+     P T      ++GSE   MS    T     ++++    V  +P G
Sbjct: 185 SSSKSPMMTSSDTPKTPLTASSPPHSSGSESRVMSPITHTNISDELSISTTPTVAFTPNG 244

Query: 371 NITEP 385
           +I  P
Sbjct: 245 SIPSP 249


>U67079-1|AAB40716.1|  539|Caenorhabditis elegans C2-HC type zinc
           finger proteinC.e-MyT1 protein.
          Length = 539

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 191 SHLKSPLATSASAVPFPGTVQLKRPAAGSEE*AMSQPRVTLAESAVAVALYSAVGASPTG 370
           S  KSP+ TS+     P T      ++GSE   MS    T     ++++    V  +P G
Sbjct: 185 SSSKSPMMTSSDTPKTPLTASSPPHSSGSESRVMSPITHTNISDELSISTTPTVAFTPNG 244

Query: 371 NITEP 385
           +I  P
Sbjct: 245 SIPSP 249


>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
            T08G11.1b protein.
          Length = 3185

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 442  SGVTTQMTDINKILHVWS-----TENKQGPENSW*FYLTLKDR 555
            SGV+ QM+  N+ + VW       EN++G    W   +T+K R
Sbjct: 1796 SGVSVQMSYYNESVSVWEPIIEPVENEKGEFERWKLAMTMKSR 1838


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
            T08G11.1a protein.
          Length = 3212

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 442  SGVTTQMTDINKILHVWS-----TENKQGPENSW*FYLTLKDR 555
            SGV+ QM+  N+ + VW       EN++G    W   +T+K R
Sbjct: 1796 SGVSVQMSYYNESVSVWEPIIEPVENEKGEFERWKLAMTMKSR 1838


>Z83235-1|CAB05775.1|  174|Caenorhabditis elegans Hypothetical
           protein K10C3.2 protein.
          Length = 174

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 269 PPDASTVPSPGTGPRWPKSPRDSSDATTCPDALKV 165
           P  A+T PSP   P   ++ R SSD  +  D L++
Sbjct: 99  PAPAATTPSPSASPISQQTNRPSSDRNSDDDNLQI 133


>U41554-1|AAA83296.2|  556|Caenorhabditis elegans Hypothetical
           protein F57C12.2 protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -3

Query: 441 PSSKVFLFLENSTLISLTWGSVIFPVGDAPTALYNATATALSANVTLGCDIAY 283
           P +K+F+FL  + L+S+    VI  +    T +     T +   + L   + Y
Sbjct: 369 PEAKIFIFLTKTDLLSVDEDKVITQLKYVKTEVIKCNRTIMCCQIALNFKMKY 421


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 269 PPDASTVPSPGTGPRWPK-SPRDSSDATTCP 180
           PP  STVPS  T    PK S   +++A+T P
Sbjct: 294 PPSTSTVPSTTTSTTTPKPSSPSTAEASTTP 324


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 175 ASGQVVASEESLGDFGQRGPVPG----DGTVEASGGRQRG 282
           A GQVVA   S+G  G +GP PG    DG     GG Q G
Sbjct: 253 APGQVVAGPGSVGPPGPQGP-PGLAGPDGQPGHGGGGQPG 291


>AF039038-4|AAK21430.1|  332|Caenorhabditis elegans Hypothetical
           protein K06A5.2 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -3

Query: 369 PVGDAPTALYNATATALSANVTLGCDIAYSSLPAAGRFNCTVPGNGTALAEVA 211
           P  D P  L NA   AL+     G DIA +++   GR    +P  G  LAE A
Sbjct: 15  PAAD-PALLANAGCVALATEA--GIDIAIATMQQFGRELEQLPERGRRLAEQA 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,838,609
Number of Sequences: 27780
Number of extensions: 225566
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)