Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29a16
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 69 8e-13
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 1.8
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi... 26 4.2
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 7.3
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 7.3
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.7
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 25 9.7
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 25 9.7
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 9.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 9.7
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 68.5 bits (160), Expect = 8e-13
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +1
Query: 235 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHMAHDVMRX 414
PP++I HGLLGSK NW S++K R + ++D R HGDS +Y MA D +
Sbjct: 21 PPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPCVAPLSYSAMALDAFQF 80
Query: 415 XXXXXXXXXXXXGHSMGGRTAMV 483
GHSMG +TAMV
Sbjct: 81 MKDHKLDKASIIGHSMGAKTAMV 103
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 501 SFTWRVNIPALKDNFQNHISSFPSNLKGLQYCGPTLFVGGSLSDYIGKNDLP 656
+F +RV I + + + I FP++L L Y PTL + + +I + LP
Sbjct: 182 TFKFRVPIELISKSLKT-IEGFPASLNDLVYDSPTLVIRALKAPFIPDSALP 232
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 462 GRPNCHGAITAM*SFTWRVNIPALKDNFQNHISSFPSNLKGLQYCGPTL 608
G +G +T + VN ++ D F N S FPS+L G+ P L
Sbjct: 176 GNSTINGMMTTPNFLSSGVNSRSV-DEFNNSSSGFPSSLNGIPIASPPL 223
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 513 RVNIP---ALKDNFQNHISSFPSNLKGLQYCGPTLFVGGSLSD 632
R+NIP A + + + S P +L+GLQ TL+ G L D
Sbjct: 30 RLNIPLADAARVELEEYDGSDPQSLRGLQKLPRTLYFGLPLPD 72
>SPAC1782.05 |||phosphotyrosyl phosphatase activator
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 102 FQ*FHKITQCQCPKMLEFYSIERRNSRFGLRFLREHFGL*KFITTSSSH 248
FQ F+ + PK+ + + IE + R+ E FG K I S H
Sbjct: 93 FQSFYDQVYIETPKLHQVFGIEHNAAMEAGRYFYESFGNRKRIDYGSGH 141
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 645 FYQYNQIVNLQQTMLVHNTEGLLS 574
F QY +++N+ ++ HN EG L+
Sbjct: 320 FLQYVKVINVGIKVVTHNIEGFLA 343
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 235 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNH 351
P + HGL+GS+N ++S+ I + G V++++ R++
Sbjct: 117 PVFIFSHGLVGSRNVYSSLCGTI-ASYGIVVLAMEHRDN 154
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 170 ALNAVEFQHLWTLTLSNFVELLKR 99
A N + LW+LT +VELLK+
Sbjct: 1148 AYNYLLSMPLWSLTYERYVELLKK 1171
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 541 IFKTTSHPSHQT*KAFSIVDQHCLLEVHYLIIL 639
IF T SHPS Q S+V L + +LII+
Sbjct: 50 IFSTMSHPSLQCFSPTSLVGAQPLKNLTHLIIV 82
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 603 LVHNTEGLLSLMGRMRCGFENYLLEP 526
+VH T G ++GR+ CG LL P
Sbjct: 48 VVHTTIGGTRIIGRLTCGNRKGLLVP 73
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 490 VIAPWQFGLPYCAQAVIPLTTLISLAAALHHE 395
+IAP FG PY QA T I+L A E
Sbjct: 111 IIAPRVFGAPYDEQAAKEAETAIALIFARFDE 142
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 546 QNHISSFPSNLKGLQYCGPTL 608
+N SS PSN+ L+YC T+
Sbjct: 466 RNSASSSPSNIAFLEYCTSTM 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,888
Number of Sequences: 5004
Number of extensions: 47933
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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