Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a16
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1587 + 38468956-38469090,38470599-38470742,38470819-384708...    52   5e-07
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034...    42   6e-04
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    36   0.029
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89...    31   1.1  
11_06_0154 + 20707811-20708210,20709252-20709523                       31   1.1  
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    29   2.5  
01_06_0328 + 28507942-28508610,28509669-28510826                       28   7.6  

>01_06_1587 +
           38468956-38469090,38470599-38470742,38470819-38470845,
           38470970-38471060,38471224-38471267,38471352-38471450,
           38472233-38472331,38472545-38472646,38472758-38472823,
           38472960-38473084,38473175-38473346,38473588-38473674
          Length = 396

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +1

Query: 235 PPLVILHGLLGSKNNWNSMSKAIHRTTGR-KVISVDARNHGDS---RHSPQHTYVHMAHD 402
           P  V+LHG+LGS+ NW S +K + +     + + VD R HGDS   +    HT    A D
Sbjct: 117 PTAVLLHGILGSRKNWGSFAKRLAQEFPMWQFLLVDLRCHGDSASIKKRGPHTVASTALD 176

Query: 403 VMRXXXXXXXXXXXXXGHSMGGR 471
           V++             GHS GG+
Sbjct: 177 VLKLIVQLRLTPRVLVGHSFGGK 199


>01_06_1428 -
           37301697-37302175,37302300-37302471,37302570-37303403,
           37303847-37304012,37304334-37304573,37304765-37304905,
           37305623-37305735,37306549-37306614,37307242-37307480,
           37307615-37307897
          Length = 910

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
 Frame = +1

Query: 247 ILHGLLGSKNNWNSMSKAI-----HRTTGR--KVISVDARNHGDSRH----SPQHTYVHM 393
           +LHGLLGS  NW S S+A+      R+     +++ VD RNHG S       P H     
Sbjct: 65  VLHGLLGSGRNWRSFSRALASELRDRSPSDEWRMVLVDLRNHGRSAGIKGLRPPHDMSTA 124

Query: 394 AHDVM-RXXXXXXXXXXXXXGHSMGGRTAM 480
           A D+                GHSMGG+ A+
Sbjct: 125 ARDLADLVKARGWAWPDVVVGHSMGGKVAL 154


>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
            22436458-22436574,22436702-22436803,22437431-22437487,
            22437976-22438044,22438423-22438533,22438597-22438791,
            22439023-22439121,22439656-22440222,22440344-22440568,
            22441036-22441338,22441640-22441707,22441947-22442105,
            22442230-22442475,22442549-22442680,22443243-22443351,
            22444131-22444283,22444359-22444601,22444695-22444862,
            22445013-22445156,22445238-22445699,22446495-22446791,
            22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 241  LVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDS 360
            ++ LHG LG+  +W  M KA+  +   +VI+VD   HG+S
Sbjct: 1483 ILFLHGFLGTSEDWVPMMKAL--SPSARVIAVDLPGHGES 1520


>12_01_0117 +
           893924-893971,894944-895003,895024-895174,895410-895884,
           895974-896316,896347-896391,896533-896631,896708-896828,
           897032-897255
          Length = 521

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 238 PLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVD 339
           P+V+LHG   S  +W  + + + R  G KV++ D
Sbjct: 164 PIVLLHGFGSSVFSWTHIMRPLARIAGAKVLAFD 197


>11_06_0154 + 20707811-20708210,20709252-20709523
          Length = 223

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 405 NAAAKEIRVVKGITAWAQYGRPNCHG 482
           N+ +K   V  G+  WA+ G+P CHG
Sbjct: 49  NSGSKRSEVGGGMRQWARRGQPRCHG 74


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 268 SKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQH 378
           S+N+ + +S + H+  GRKVIS ++ N   +    QH
Sbjct: 250 SRNSGDDISSSFHKEQGRKVISRNSENDRVASFHKQH 286


>01_06_0328 + 28507942-28508610,28509669-28510826
          Length = 608

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 256 GLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHM 393
           G + SK++  S    I    G +  ++DA +   S + PQ  Y H+
Sbjct: 500 GAISSKSDVYSYGMMILEMVGARERNIDANSESSSHYFPQWIYEHL 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,088,992
Number of Sequences: 37544
Number of extensions: 298568
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)