Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a15
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    32   0.090
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    30   0.27 
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    30   0.27 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    30   0.36 
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    29   0.63 
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    29   0.63 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    29   0.84 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    29   0.84 
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    28   1.1  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   4.5  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   4.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   4.5  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   4.5  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   5.9  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   7.8  

>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 377 INKDVENNCRRVFRSGITHEEWTVSWDGVNDDEDKLSDIDE-LRSGKIKSQKQNKNTDAA 553
           + +DV +N   + +     +E  +  + V+D ED  SDIDE   +GK  S  +N  +D  
Sbjct: 538 VGEDVISNLTMIVKDTSVLQE-QLQEEAVSDLEDN-SDIDESANAGKDFSDDENIGSDEE 595

Query: 554 NDSDEEPADKKARAGK 601
           ++S+ +P D     G+
Sbjct: 596 DESEYDPMDTDTSDGE 611


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 491 IDELRSGKIKSQKQNKNTDAANDSDEEPADKKARAGKTKE 610
           ++E+   ++K  K+ +  ++ ND  EE  DKK R  K KE
Sbjct: 109 VEEVLEARLKGDKEARGQNS-NDQPEESDDKKKRKKKVKE 147


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +2

Query: 488 DIDELRSGKIKSQKQNKNTDAANDSDEEPAD 580
           ++DELR   ++S+K+N+  D +NDSD+E  +
Sbjct: 6   NLDELRKKALESKKKNEE-DESNDSDKEDGE 35


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +2

Query: 455 DGVNDDEDKLSDIDELRSGKIKSQKQNKNTDAANDSDEEPADK-KARAGKTKED 613
           D ++ DE++    ++ +  K KS+ ++  ++A +D D E ++K K +  K+KE+
Sbjct: 134 DDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKEN 187


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 437  EWTVSWDGVNDDEDKLSDIDELRSG--KIKSQKQNKNTDAANDSD 565
            EW  S    ++D+  LSD +E +SG  K K +K+ K+      SD
Sbjct: 916  EWRKSQQKASEDDMSLSDDEEKQSGKKKKKDRKKRKSKSKQESSD 960


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 165 NYFGCLLSAFYNYYNYLCRMTTVG 236
           +Y G  LS +YN+  Y CR  +VG
Sbjct: 157 SYIGSKLSRYYNWLKYNCRFFSVG 180


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 338  TSVFKN--RQFLSCAINKDVENNCRRVFRSGITHEEWTVSWDGVNDDEDKLSDIDELRSG 511
            T VF+   R  + C   KDVE   RR+ +S +        + G   DE++  + D  R+ 
Sbjct: 1409 TKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNA 1468

Query: 512  KIKSQ 526
              K++
Sbjct: 1469 NGKTR 1473


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 338  TSVFKN--RQFLSCAINKDVENNCRRVFRSGITHEEWTVSWDGVNDDEDKLSDIDELRSG 511
            T VF+   R  + C   KDVE   RR+ +S +        + G   DE++  + D  R+ 
Sbjct: 1409 TKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNA 1468

Query: 512  KIKSQ 526
              K++
Sbjct: 1469 NGKTR 1473


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
 Frame = +2

Query: 434 EEWTVSWDGVNDDEDKLSDIDEL----RSGKIKSQKQNKNTDAANDSDEEPADKKARAGK 601
           EE  + +   ++DE+++SD+++     +S +    ++ +++++ +D DE+  D K +  K
Sbjct: 207 EEAELEFVSDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDED-EDNKGKIRK 265

Query: 602 TKED 613
            K D
Sbjct: 266 RKTD 269


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 387 SLFIAHERN*RFLKTDVYRKGP*QLWDLGSILHADMTPITRSLPWYFTISGPPW 226
           S+F AH +    L+ DV+R        LG I H  + P  R   W F +S  PW
Sbjct: 388 SMFNAHGK----LQVDVHRV-------LGIIFHGGIQPSLRKEVWPFLLSVYPW 430


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 404 RRVFRSGITHEEWTVSWDGVNDDEDKLSDIDELRSGKIKSQKQNKN 541
           RR  R     ++  V+W+ ++DD   +   D+ RS KI  QK N N
Sbjct: 113 RRKVRRTYDTKDGFVAWNTLDDDFRPIVP-DQERSRKINPQKGNNN 157


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 383 KDVENNCRRVFRSGITHEEWTVSWDGVNDDEDKLSDI-DELRSGKIKSQKQNKNTDAAND 559
           KD   + R+  R  +  + +  S D  + + +KL D  DEL +G+ K + Q  +++    
Sbjct: 319 KDWLESTRQFVRKVLLKKGYAKS-DASDKEFNKLRDKGDELLNGRYKKRWQQLSSEVKKI 377

Query: 560 SDEEPADKKAR 592
           SD   +DK  +
Sbjct: 378 SDSASSDKDVK 388


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 467 DDEDKLSDIDELRSGKIKSQKQNKNTDAANDSD-EEPADKKARAGKTKEDAS 619
           D E+K + I    +GK ++  + K TD+   +D +E  D K    K +E  S
Sbjct: 438 DVEEKDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETES 489


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 419 SGITHEEWTVSWDGVN-DDEDKLSDIDELRSGKIK-SQKQNKNTDAANDSDEE 571
           +G   + W VS DG N DD     D+D   + ++  S ++ +   A  +SDE+
Sbjct: 521 NGDDWDNWEVSEDGQNSDDSGGWIDVDSDDNIELSDSDEEEEKATARKESDEK 573


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 374 AINKDVENNCRRVFRSGITHEEWTVSWDGVNDDEDKLSDIDELRSGK 514
           A +KD E N    +      E  TV WDG  ++  KL ++ + +S K
Sbjct: 169 AFSKDPELNASATWGK-FASEILTVDWDGAMEELGKLREMVDSKSFK 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,763
Number of Sequences: 5004
Number of extensions: 50658
Number of successful extensions: 194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)