Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a14
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    31   0.12 
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    31   0.21 
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.28 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    29   0.86 
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|...    29   0.86 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   2.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.6  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   3.5  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    26   4.6  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   6.1  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   6.1  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   8.0  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    25   8.0  

>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 141 TVSDDLTRENSASEISKCIKDLSANNRNLS 230
           ++S  LTRE+S  E  K IKDLS  NR+LS
Sbjct: 243 SISAVLTRESSKYEKGKVIKDLSYLNRDLS 272


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = +2

Query: 359 IINRKITMSAKSTTPRKRNQRITTRLSQENINKCNKSVERQRARTFVTWYKQMIDNERQN 538
           ++  ++ +  +    R R +R+   ++++   K N+    +RA TF+  Y+Q    ER+ 
Sbjct: 12  MLEPEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQ---RERER 68

Query: 539 LAL 547
           + L
Sbjct: 69  IRL 71


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
 Frame = +3

Query: 105 CFTAVEDCKMNSTVSDDLTRENSASEISKCIKDLSANNRNLSLLHK-ELLEINLSV--KT 275
           CF+ +ED K    +SD++       +I   + +L    ++L+L H+  L E +L V   +
Sbjct: 248 CFSFLEDAKTKEGLSDEMKSSPKLQQIYHRLDELLNKLKHLTLTHRWTLRETDLYVYRAS 307

Query: 276 YVQESKKRLQGLRLDLAHEARSSHQVVELLTEK 374
             +    R+ G  LD    A +  +++  L  +
Sbjct: 308 LAEIDSMRIDGQFLDEQGNAPAGQRILLYLLRR 340


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 359 IINRKITMSAKSTTPRKRNQRITTRLSQENINKCNKSVERQRART 493
           I+NRK T+  K + P+K+N+  +T   +  + +   S E +  ++
Sbjct: 294 ILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSSEEEAVKS 338


>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 19/85 (22%), Positives = 37/85 (43%)
 Frame = +2

Query: 434 LSQENINKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTIKTRKKVS 613
           +++++I K  K+ +  + +  +TW K +ID  R  L     D   LEW  + +     + 
Sbjct: 1   MNKKSILKKPKNAQSTQEKQLITWSKSLIDEARSRLQY---DFFALEWIEKLVDP-VSLE 56

Query: 614 AFLKHDMHCSKHDFTSVESIEKIQN 688
              +   +  K D+  V    K+ N
Sbjct: 57  TLEEARKYLRKSDYDQVVKERKLVN 81


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
 Frame = +3

Query: 168 NSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQGLRLDLAHEARSSH 347
           N  SEI+  ++      + L    + L  + L  + + ++ +K    L +    +   S 
Sbjct: 430 NRVSEINSSLEKQLTTQKELRSRFEILFPVKLQREDFTKDVEK--SDLWIKSLRQEYESK 487

Query: 348 QVVELLTEK*QCQQSQQHRANEIKG*LQDYHR----RTSTNVTNQ*KDSELGLL 497
            ++ELL +      S ++R +EI   +  YH+    RT   V  + K ++  +L
Sbjct: 488 NLLELLDKHQTALSSVENRLDEISEIVDSYHKYSGVRTKLQVFEENKTNKSAIL 541



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +3

Query: 156  LTREN-SASEISKCIKDLSANNRNLSLLHKELLEINL---SVKTYVQESKKRLQGLRLDL 323
            LT+ N   +E+ +  KD++ ++ +  L  K+LLE++    S   ++ E +   + L  D+
Sbjct: 865  LTKLNFQVNELEQLEKDINKSSEDCDLQKKKLLEVSSKQGSQAPFLNELESEYEKLEADI 924

Query: 324  AHEARSS 344
               A+ S
Sbjct: 925  QEMAQKS 931


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 557 DDAFLEWFGRTIKTRKKVSAFLKHDMH-CSKH 649
           DDAF+E+   T+  RK    FL H++   SKH
Sbjct: 691 DDAFVEYKDATVANRKDFIEFLFHNITVSSKH 722


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 129  KMNSTVSDDLTRENSASEISKCIKDLSANNRNLSLL 236
            K+NS  SD L  +N  + ISK +   +A N+ LSLL
Sbjct: 1395 KINSLCSDCL--KNPCATISKAVTQHNAYNKKLSLL 1428


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 132 MNSTVSDDLTRENSASEISKCIKDLSANNRNLSLLHKELLEINLSVK 272
           + S VSD++   +S  E S   K +  N++NL    ++ +E NLS++
Sbjct: 35  IKSRVSDEIDEHDSIPEQSNTEKSIEINDKNLEA--EKDIESNLSLR 79


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +2

Query: 449 INKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTIKTRKKVSAFLKH 628
           I K +++  R  + T  TW  Q   +  Q ++   A+ A   W  RT+ T + + A    
Sbjct: 277 IRKAHENSGRDCSITSATWLPQ---STSQVISSCSANSALKLWDLRTVHTVRPLPAATTP 333

Query: 629 DMHCSKHDF 655
           ++  SK DF
Sbjct: 334 ELTTSKRDF 342


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 259 LISKSSLCSNERFLLLAERSFMHLEISEAEFS 164
           +IS +   S+E  + LAE+ F HLE S  + S
Sbjct: 205 IISSAGSISHEELVKLAEKYFGHLEPSAEQLS 236


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 120  EDCK-MNSTVSDDLTRENSASEISKCI 197
            E C  MNST +D++T ENS SEI + I
Sbjct: 961  EQCSCMNSTENDNITTENS-SEIVQVI 986


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 443 ENINKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLE 574
           E IN C    E++R R F + +KQ      Q     L + A  E
Sbjct: 505 ETINYCLNMTEKERERRFSSLWKQATSQSSQQWIYKLINRAAYE 548


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +3

Query: 147 SDDLTRENSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQGLRLDLA 326
           S+D  R +S   I   I  + A N   +     LL    +    +  +KK+ +G  +DL 
Sbjct: 9   SNDSVRSSSFKSIKIVI--VGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLN 66

Query: 327 HEARSSHQVVELLTEK*QCQQS 392
           H A  SH+    L +   C+ +
Sbjct: 67  HAAPLSHETRVYLGDYKDCKDA 88


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 126 CKMNSTVSDDLTRENSASEIS-KCIKDLSANNRNLSLLHKELLE 254
           CK+     +       ASEI+  C+ D     + L+++HKELLE
Sbjct: 453 CKLAEAQINIEMISQGASEINISCVIDEKMAVKALNVIHKELLE 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,478
Number of Sequences: 5004
Number of extensions: 53788
Number of successful extensions: 160
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)