Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a14
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.93 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.93 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.0  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 705 CNFSCLFCIFSILSTDVKSCFEQCI-SCFKKALT 607
           CN +   CI+++ S D +  F+  I  CF K  T
Sbjct: 53  CNSAINPCIYALFSKDFRFAFKSIICKCFCKRRT 86


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 705 CNFSCLFCIFSILSTDVKSCFEQCI-SCFKKALT 607
           CN +   CI+++ S D +  F+  I  CF K  T
Sbjct: 501 CNSAINPCIYALFSKDFRFAFKSIICKCFCKRRT 534


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 164 PS*IIRYSGIHFTILYCCKTLEYYI 90
           PS I +YS I F + + C  L Y+I
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 164 PS*IIRYSGIHFTILYCCKTLEYYI 90
           PS I +YS I F + + C  L Y+I
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 164 PS*IIRYSGIHFTILYCCKTLEYYI 90
           PS I +YS I F + + C  L Y+I
Sbjct: 339 PSDIDKYSRIVFPVCFVCFNLMYWI 363


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 455 KCNKSVERQRARTFVTWYK 511
           +C  S   Q    F+TWYK
Sbjct: 351 RCEVSTHPQAGPHFITWYK 369


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 455 KCNKSVERQRARTFVTWYK 511
           +C  S   Q    F+TWYK
Sbjct: 351 RCEVSTHPQAGPHFITWYK 369


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 202 IFPLITETSHYYTKNFWKLTFRL 270
           +FP   +  H Y +N W L+ +L
Sbjct: 482 VFPNDIKVDHEYDQNVWVLSNKL 504


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 134  HFTILYCCKTL-EYYIFVVKERKN 66
            H T    C T  EYY   VK++KN
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKN 981


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,357
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)