Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a07
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947...    66   3e-11
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406...    28   6.3  

>04_04_1465 +
           33794225-33794389,33794471-33794597,33794669-33794799,
           33795153-33795254,33795337-33795420,33795504-33795731,
           33795934-33796038,33796376-33796731,33797146-33797303,
           33797399-33797505,33797852-33798061
          Length = 590

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
 Frame = +1

Query: 193 VAVITVSDTCFKDNSKDESGPALCHLV----KKLFPDSNLHTIIVPDEREMIERELKYFC 360
           VA++TVSDT       D SGP    +V    +KL   + + T +VPD+ E I+  L  + 
Sbjct: 415 VAILTVSDTVSLGAGPDRSGPRAISVVNSSSEKLGGATVVATAVVPDDVEKIKNILVKWS 474

Query: 361 D-SNLDXXXXXXXXXXSPRDVTPEATKVVIHKEIPSISVALTLESLKKTPMAMLSRSVAG 537
           D   +           +PRDVTPEATK VI KE P ++  +  ESLK             
Sbjct: 475 DIDRVSLILTLGGTGFTPRDVTPEATKSVIEKEAPGLTYVMLQESLK------------- 521

Query: 538 LRDKTLIVNLPGSKKAVLECFEVI 609
                 I+N+PG+  AV EC E +
Sbjct: 522 ------IINMPGNPNAVAECMEAL 539


>05_03_0582 -
           15738503-15739301,15739385-15739642,15740585-15740670,
           15740879-15740960,15741044-15741213,15742081-15742194,
           15742984-15743082,15743171-15743249,15744604-15744710
          Length = 597

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 296 LESGNNFLTKWQSAGPDSSLELSLKQVSLTVMTATAFIIFSKYFE 162
           L+  N+F    +SAGP S +  S KQ         +++  +KYF+
Sbjct: 525 LQQSNSFGVPLRSAGPQSPINGSTKQPMSAGARRPSYVSSNKYFD 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,688
Number of Sequences: 37544
Number of extensions: 263910
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)