Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a07
         (708 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030016-1|AAH30016.1|  769|Homo sapiens gephyrin protein.            118   2e-26
AJ272343-1|CAC10537.1|  769|Homo sapiens gephyrin protein.            118   2e-26
AJ272033-1|CAC81240.1|  736|Homo sapiens gephyrin protein.            118   2e-26
AF272663-1|AAF81785.1|  736|Homo sapiens gephyrin protein.            118   2e-26
AB037806-1|BAA92623.1|  768|Homo sapiens KIAA1385 protein protein.    118   2e-26

>BC030016-1|AAH30016.1|  769|Homo sapiens gephyrin protein.
          Length = 769

 Score =  118 bits (285), Expect = 2e-26
 Identities = 67/142 (47%), Positives = 89/142 (62%), Gaps = 3/142 (2%)
 Frame = +1

Query: 193 VAVITVSDTCFKDNSKDESGPALCHLVK--KLFPDSNLHTIIVPDEREMIERELKYFCDS 366
           V V+TVSD+CF++ ++D SG  L  LV+   L   +     IVPDE E I+  L  +CD 
Sbjct: 17  VGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDE 76

Query: 367 N-LDXXXXXXXXXXSPRDVTPEATKVVIHKEIPSISVALTLESLKKTPMAMLSRSVAGLR 543
             L+          +PRDVTPEATK VI +E P +++A+ + SL  TP+ MLSR V G+R
Sbjct: 77  KELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIR 136

Query: 544 DKTLIVNLPGSKKAVLECFEVI 609
            KTLI+NLPGSKK   ECF+ I
Sbjct: 137 GKTLIINLPGSKKGSQECFQFI 158



 Score = 33.9 bits (74), Expect = 0.57
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 575 AKKLSWNALKSSKPILPHAIALVRNELSEVRTIHDSLQ 688
           +KK S    +   P LPHAI L+R+ + +V+ +HD L+
Sbjct: 147 SKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELE 184


>AJ272343-1|CAC10537.1|  769|Homo sapiens gephyrin protein.
          Length = 769

 Score =  118 bits (285), Expect = 2e-26
 Identities = 67/142 (47%), Positives = 89/142 (62%), Gaps = 3/142 (2%)
 Frame = +1

Query: 193 VAVITVSDTCFKDNSKDESGPALCHLVK--KLFPDSNLHTIIVPDEREMIERELKYFCDS 366
           V V+TVSD+CF++ ++D SG  L  LV+   L   +     IVPDE E I+  L  +CD 
Sbjct: 17  VGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDE 76

Query: 367 N-LDXXXXXXXXXXSPRDVTPEATKVVIHKEIPSISVALTLESLKKTPMAMLSRSVAGLR 543
             L+          +PRDVTPEATK VI +E P +++A+ + SL  TP+ MLSR V G+R
Sbjct: 77  KELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIR 136

Query: 544 DKTLIVNLPGSKKAVLECFEVI 609
            KTLI+NLPGSKK   ECF+ I
Sbjct: 137 GKTLIINLPGSKKGSQECFQFI 158



 Score = 33.9 bits (74), Expect = 0.57
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 575 AKKLSWNALKSSKPILPHAIALVRNELSEVRTIHDSLQ 688
           +KK S    +   P LPHAI L+R+ + +V+ +HD L+
Sbjct: 147 SKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELE 184


>AJ272033-1|CAC81240.1|  736|Homo sapiens gephyrin protein.
          Length = 736

 Score =  118 bits (285), Expect = 2e-26
 Identities = 67/142 (47%), Positives = 89/142 (62%), Gaps = 3/142 (2%)
 Frame = +1

Query: 193 VAVITVSDTCFKDNSKDESGPALCHLVK--KLFPDSNLHTIIVPDEREMIERELKYFCDS 366
           V V+TVSD+CF++ ++D SG  L  LV+   L   +     IVPDE E I+  L  +CD 
Sbjct: 17  VGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDE 76

Query: 367 N-LDXXXXXXXXXXSPRDVTPEATKVVIHKEIPSISVALTLESLKKTPMAMLSRSVAGLR 543
             L+          +PRDVTPEATK VI +E P +++A+ + SL  TP+ MLSR V G+R
Sbjct: 77  KELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIR 136

Query: 544 DKTLIVNLPGSKKAVLECFEVI 609
            KTLI+NLPGSKK   ECF+ I
Sbjct: 137 GKTLIINLPGSKKGSQECFQFI 158



 Score = 33.9 bits (74), Expect = 0.57
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 575 AKKLSWNALKSSKPILPHAIALVRNELSEVRTIHDSLQ 688
           +KK S    +   P LPHAI L+R+ + +V+ +HD L+
Sbjct: 147 SKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELE 184


>AF272663-1|AAF81785.1|  736|Homo sapiens gephyrin protein.
          Length = 736

 Score =  118 bits (285), Expect = 2e-26
 Identities = 67/142 (47%), Positives = 89/142 (62%), Gaps = 3/142 (2%)
 Frame = +1

Query: 193 VAVITVSDTCFKDNSKDESGPALCHLVK--KLFPDSNLHTIIVPDEREMIERELKYFCDS 366
           V V+TVSD+CF++ ++D SG  L  LV+   L   +     IVPDE E I+  L  +CD 
Sbjct: 17  VGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDE 76

Query: 367 N-LDXXXXXXXXXXSPRDVTPEATKVVIHKEIPSISVALTLESLKKTPMAMLSRSVAGLR 543
             L+          +PRDVTPEATK VI +E P +++A+ + SL  TP+ MLSR V G+R
Sbjct: 77  KELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIR 136

Query: 544 DKTLIVNLPGSKKAVLECFEVI 609
            KTLI+NLPGSKK   ECF+ I
Sbjct: 137 GKTLIINLPGSKKGSQECFQFI 158



 Score = 33.9 bits (74), Expect = 0.57
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 575 AKKLSWNALKSSKPILPHAIALVRNELSEVRTIHDSLQ 688
           +KK S    +   P LPHAI L+R+ + +V+ +HD L+
Sbjct: 147 SKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELE 184


>AB037806-1|BAA92623.1|  768|Homo sapiens KIAA1385 protein protein.
          Length = 768

 Score =  118 bits (285), Expect = 2e-26
 Identities = 67/142 (47%), Positives = 89/142 (62%), Gaps = 3/142 (2%)
 Frame = +1

Query: 193 VAVITVSDTCFKDNSKDESGPALCHLVK--KLFPDSNLHTIIVPDEREMIERELKYFCDS 366
           V V+TVSD+CF++ ++D SG  L  LV+   L   +     IVPDE E I+  L  +CD 
Sbjct: 49  VGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDE 108

Query: 367 N-LDXXXXXXXXXXSPRDVTPEATKVVIHKEIPSISVALTLESLKKTPMAMLSRSVAGLR 543
             L+          +PRDVTPEATK VI +E P +++A+ + SL  TP+ MLSR V G+R
Sbjct: 109 KELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIR 168

Query: 544 DKTLIVNLPGSKKAVLECFEVI 609
            KTLI+NLPGSKK   ECF+ I
Sbjct: 169 GKTLIINLPGSKKGSQECFQFI 190



 Score = 33.9 bits (74), Expect = 0.57
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 575 AKKLSWNALKSSKPILPHAIALVRNELSEVRTIHDSLQ 688
           +KK S    +   P LPHAI L+R+ + +V+ +HD L+
Sbjct: 179 SKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELE 216


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,613,499
Number of Sequences: 237096
Number of extensions: 1573867
Number of successful extensions: 6047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6037
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)