Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a05
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    28   1.1  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.0  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   3.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   3.5  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   4.6  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   4.6  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    26   4.6  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   6.1  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   8.0  

>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 630 LYSHHFMYYIYKVVIVS-YLYVLQ 698
           L+ HH +YYIY  ++++ Y Y +Q
Sbjct: 377 LFEHHDVYYIYNAIVLNDYAYWIQ 400


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 5    YGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 151
            YG    SY+P+   Y T   +   P +  Y    P+  P    YS T P
Sbjct: 1551 YGLTSPSYSPSSPGYSTSPAY--MPSSPSYSPTSPSYSPTSPSYSPTSP 1597


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 8   GQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTG 115
           G NDG    N      G G    P    Y EP P G
Sbjct: 838 GGNDGGGTENHRDSTVGGGILKNPKAYPYREPTPPG 873


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 163 DTGDWVGETVEEAPWWTGWFGL 98
           D   +V  T E APW   WFG+
Sbjct: 695 DPSKFVDRTPENAPWKPYWFGI 716


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 316 NTH*FQNHLSLVSVMSSSNGFLRIVATDGNGVFVGWISSWCRSSLQITLQDDTG 155
           NT     H+   ++++ +N ++R V        +G I+SW  S LQI   D+ G
Sbjct: 516 NTPLVMQHID--NLVTQANIYIREVGQQPCSRLLGQIASWITSMLQIFGLDENG 567


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 286 LVSVMSSSNGFL---RIVATDGNGVFVGWISSWCRSSLQIT 173
           L S M +S G      ++A  G G F  W++ W    +Q+T
Sbjct: 97  LCSSMPTSGGLYYAAAVLAPKGWGPFAAWLTGWSNYLVQVT 137


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 32  PNQGSYQTGQGFTGKPLNEKYEEPE 106
           PN   YQT QG  G P+++++ + +
Sbjct: 380 PNAMMYQTQQGRQGNPMHQQFSQQQ 404


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 187 SLQITLQDDTGDWVGETVEEAPWWTGWF 104
           SL +  +D T  W  +  + +P+W  WF
Sbjct: 230 SLLVQQEDGTFVWRTDLYKTSPYWMDWF 257


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 3   VTVKTMAAIIQTKEATKPVKDSPESL*MKNTKSP 104
           + V   A I++ +E  +PV+ SPE    K T  P
Sbjct: 494 ILVVEQAYIVEEQEVEEPVETSPEEEAEKKTDEP 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,371
Number of Sequences: 5004
Number of extensions: 55228
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)