Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29a02
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 32 0.067
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 28 1.1
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 27 1.9
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 2.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.5
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 4.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.8
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 5.8
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 7.7
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 32.3 bits (70), Expect = 0.067
Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 11/123 (8%)
Frame = -2
Query: 675 LLNFFFCISYFLK*ETFLIMFHFYFHFIAAILMRRF---LIIFVFHISHGLIIGR----- 520
+ FF S F E+ F F +L L FVF SH L+ +
Sbjct: 1 MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLK 60
Query: 519 -PFTFRFTIDSLKFFYLEQFLFLRFYGLMSSFES*NISFYNVNV--YCCIFWIHTLFPCF 349
P+ T FFY F F F + I Y+ NV + C F+ +LF F
Sbjct: 61 LPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFF 120
Query: 348 SFI 340
SF+
Sbjct: 121 SFL 123
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 465 FLFLRFYGLMSSFES*NISFYNVN 394
F FL+ + + SSF S N + YN+N
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLN 266
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 271 WKFMEGKSRIEWLLSYEYQRMWLDEREAWKKRM 369
WK + + EW + E + W + + W+K M
Sbjct: 165 WKKAREEDKAEWKKAREEDKEWRNSMDEWRKSM 197
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 502 KTKSKRSADDKAMAYMKNKDNKKT 573
K+K KRSADD + K+K KK+
Sbjct: 473 KSKKKRSADDASEEVKKSKKKKKS 496
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 220 PIHNIISSDFPK--YNPQPWKFMEGKSRIEWLLSYEYQRMWLDERE 351
PI ++ SDF Y+P +K G +E L+ ++ WL +R+
Sbjct: 1104 PIFEVLLSDFRHKCYDPHWYKKYGGCFGLECLIEQDHSSKWLFDRQ 1149
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 493 IDSKTKSKRSADDKAMAYMKNKDNKKTSH*YCSNEMKIKMKHDKKG 630
++ KTKS+ +A +A A +K K+ K + N +++ HD +G
Sbjct: 271 VNKKTKSREAALLRARAVVKKKERGKQNVPTNVNFPALQLLHDPQG 316
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 424 KLKHIVLQCQRLLLYFLDTYAFSMLLFHLTTCVDIHMIATIRYVIYL 284
K K I+ QC+ ++L L+ FS + +++HM+ I +YL
Sbjct: 1164 KKKVILEQCEYVILDILNFLKFSGIPTQSKKRLEVHMLNFISSTLYL 1210
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -1
Query: 589 CNINETFSYYLCFSYKPWPYHRQTVYFS----FYYRFPQIFLS 473
C +F YYLCF + +R + Y+S + +PQ ++S
Sbjct: 156 CEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEKLFEDYPQYYMS 198
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +1
Query: 187 GIKWEKSIQCRPIHNIISSDFPKYNPQPWKFMEGKSRIEWLLSYEYQRMWLDEREAWKKR 366
G + K + +H IIS DF N F+ W++ ++ ++LD + + ++
Sbjct: 226 GFRTPKDQDAKDVHFIISQDFNGINAGS-LFIRNSEVGRWIVDLWFEPLYLDHIQGYAEQ 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,882
Number of Sequences: 5004
Number of extensions: 52322
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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