Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a02
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    27   0.55 
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   3.9  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 27.1 bits (57), Expect = 0.55
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 154 AGLILIMGRMTGIKWEKSIQCRPIHNIISSDFPKYNPQPWKFMEGKSRIE 303
           AG  ++M R+ G +         +  IIS  FP++ P  W  +     +E
Sbjct: 413 AGYRVVMSRLRGSRTPSEADRVVLERIISDLFPEHPPCDWSQLSNVGSVE 462


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +1

Query: 157 GLILIMGRMTGIKWEKSIQCRPIHNIISSDFPKYNPQPWKFM 282
           G  ++M  + G +  +      +  I+S  FP + P PW ++
Sbjct: 373 GYRVVMSTLRGSRVPQEKDPIELGRIVSDLFPNHPPVPWPYV 414


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,391
Number of Sequences: 2352
Number of extensions: 12757
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)