Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29a02
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-4|CAB01963.1|  398|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm rece...    31   1.0  
Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical p...    29   4.1  
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    29   4.1  
AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical...    29   4.1  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   5.4  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    28   7.1  

>Z79694-4|CAB01963.1|  398|Caenorhabditis elegans Hypothetical
           protein C15A11.4 protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 283 EGKSRI-EWLLSYEYQRMWLDEREAWKKRMYPENTTVNVDIVKRY 414
           E  S+I +W   Y  +   LDE+ A K + +PEN TV+  +  +Y
Sbjct: 17  ESNSKILKWCKKYLLEGQQLDEKHAEKVQNFPENPTVSDFVFIKY 61


>AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 84 protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -2

Query: 684 RTL--LLNFFFCISYFLK*ETFLIMFHFYFHFIAAILMRRFLIIFVFHISHGLIIGRPFT 511
           RTL  LL   FC  Y       ++  HF + F+A I   R+L +F        ++G  FT
Sbjct: 86  RTLGPLLILQFCTMYVTM--LIILSVHFIYRFVA-IFHHRYLWMFSKLYLMFWVLGS-FT 141

Query: 510 FRFTIDSLKFFYLEQF 463
               + SLK+F+L +F
Sbjct: 142 LGLFLISLKYFFLGEF 157


>Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical
           protein C55A1.14 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = -2

Query: 681 TLLLNFFFCISY--FLK*ETFLIMFHFYFHFIAAILMRRFLIIFVFHISHGLIIGRPFTF 508
           +++L F+F ++   ++K +T L+ F    HF   ++++   +IFV      ++I R F  
Sbjct: 31  SVILPFYFYVNKINYMKDKTTLL-FPITNHF--CVMIKMAYMIFV------ILICRVFPC 81

Query: 507 RFTIDSLKFFYLEQFLFLRFYGLMSSFES 421
            F I++L F+ L   LFL FY L    +S
Sbjct: 82  -FKINTLSFYLLPIALFLTFYTLYIFIQS 109


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/92 (20%), Positives = 36/92 (39%)
 Frame = -2

Query: 615  FHFYFHFIAAILMRRFLIIFVFHISHGLIIGRPFTFRFTIDSLKFFYLEQFLFLRFYGLM 436
            F ++F F      + F+++ ++HI  G+I            SL   YL   +F   +   
Sbjct: 1255 FTYWFQFFFESAPKGFMMVTMYHILTGMIGSIAVPIISQTSSLDAGYLWSIIFAWLFPTY 1314

Query: 435  SSFES*NISFYNVNVYCCIFWIHTLFPCFSFI 340
            +  +   ++F N NV      +    P F  +
Sbjct: 1315 NISQIATVTFQNENVRIACKKLDCTIPMFKAV 1346


>AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical
           protein F41E6.14 protein.
          Length = 656

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -2

Query: 621 IMFHFYFHFIAAILMRRFLIIFVFHISHGLIIGRPFTFRFTIDSLKFFYLEQFL 460
           I+    FH    I    F+ + +F +  G ++ +  +  FT+ S+  FY  +F+
Sbjct: 17  IILVLIFHLFPKIFSNGFVGVDMFFVLSGYLMTKILSKEFTLKSVLIFYKNRFI 70


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 385 LYFLDTYAFSMLLFHLTTCVDIHMIATIRYVIYLP 281
           L++L T+ F   +  +T+C+ I ++ ++R   YLP
Sbjct: 179 LFYLSTFIFLNCMLIVTSCLYIPIMISVRKFSYLP 213


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 544 KPWPYHRQTVYFSFYYRFPQIFLS*TVSFFAFLWLDEQF*KLKHIVLQCQRLL 386
           +P P+H  T      Y    +F S T++FF  L  ++   K+  ++   ++++
Sbjct: 750 RPQPFHFTTFIQMIRYTVEAVFASYTIAFFFSLAFEKPLNKIDEMLFNSKKMM 802


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 544 KPWPYHRQTVYFSFYYRFPQIFLS*TVSFFAFLWLDEQF*KLKHIVLQCQRLL 386
           +P P+H  T      Y    +F S T++FF  L  ++   K+  ++   ++++
Sbjct: 750 RPQPFHFTTFIQMIRYTVEAVFASYTIAFFFSLAFEKPLNKIDEMLFNSKKMM 802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,430
Number of Sequences: 27780
Number of extensions: 280983
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)