Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p23
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    87   2e-18
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    73   4e-14
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    66   6e-12
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.4  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   5.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   7.3  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   9.7  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 38/76 (50%), Positives = 51/76 (67%)
 Frame = +1

Query: 412 RKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVI 591
           + GD + MHYTGTL +G +FDSS+ RG+P    +G GQ+I+GWD+G+  M  GE+ KL I
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77

Query: 592 PPELAYGSAGAPPKIP 639
            P+  YG  G P  IP
Sbjct: 78  TPDYGYGPRGFPGLIP 93


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 35/75 (46%), Positives = 47/75 (62%)
 Frame = +1

Query: 418 GDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPP 597
           G  + M Y G L++G  FD +  +G P  F LG G+VI+GWD G+ GM EG +RK+ IP 
Sbjct: 275 GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPA 333

Query: 598 ELAYGSAGAPPKIPK 642
            +AYG+    P IPK
Sbjct: 334 PMAYGNQSI-PGIPK 347


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 32/65 (49%), Positives = 40/65 (61%)
 Frame = +1

Query: 433 MHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPPELAYG 612
           M Y G L +G  FD +I  G P TF LG  +VIKGWD G++GM  G +R + IP  +AYG
Sbjct: 281 MRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYG 339

Query: 613 SAGAP 627
           S   P
Sbjct: 340 SKRLP 344


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 244 NTDFLT*LHSLFNCYKTLLNTKMRFKSTLNVP 149
           +TD +  L  + NCY  + N K + +ST N P
Sbjct: 582 DTDSIDVLEDIDNCYSKVFNKKSKRESTSNEP 613


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 467 NLIVQF-LEVTP*PSNLVLVKLLRVGIKGYLECAKENNVNLS 589
           NL+ Q+ +E+    S LVL K LR+ ++  LE  K   ++ S
Sbjct: 21  NLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVKTKQISSS 62


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
 Frame = +2

Query: 395 TVPSRAAKEIFCICTTLAL*MTVQNLIVQFLEVTP*PSNLVLVKLLRVG----IKGYLEC 562
           T  +  A+  F I   +AL +    ++ +  E  P      +V+ L V       GYL  
Sbjct: 718 TTLTMCAEGEFLISLVMALRLNEYKVVQKVYESIPITDVEHVVQELPVSYLANFMGYLSS 777

Query: 563 AKENNVNLSFHRNWLMVQLEHHQRYXK 643
                 ++ FH  W+   L +H  Y +
Sbjct: 778 FAAETPHIEFHLRWMKSVLTYHGEYLR 804


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 527 LLRVGIKGYLECAKENNVNLSFHRNWLMVQLEHHQRYXKSAT 652
           ++ VG++  L        N+ FHR +L   L+++  Y  +AT
Sbjct: 51  IINVGLRLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAAT 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,964
Number of Sequences: 5004
Number of extensions: 40142
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)