Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p22
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...    95   8e-21
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   2.3  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   5.4  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    25   7.2  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   9.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   9.5  

>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score = 95.1 bits (226), Expect = 8e-21
 Identities = 50/148 (33%), Positives = 83/148 (56%)
 Frame = +2

Query: 206 EEAVDCYLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDAN 385
           +EA + +L AAN +++ K+   AG AF  AA++ LK   + DAA+ +V+A   Y++   +
Sbjct: 32  DEASELFLDAANGYRLQKQGSAAGYAFEKAAEMQLKTDDKDDAASTYVEAFKSYRREKPS 91

Query: 386 EAVSCLLKAIEIYTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAADYFRGEEST 565
           EA   L  AIE++T  G F  AA    ++ +++E E  D   A+  YE A +++  +++ 
Sbjct: 92  EAARVLQIAIELFTRRGNFRRAANYKMDLGDIFEQELQDTKAALGAYEDAGEWYSSDQAD 151

Query: 566 SSANKCMLKLAQYAAQLEHYDKAIQIYE 649
           + ANK  LK A  A     Y  AI+ +E
Sbjct: 152 ALANKAYLKAADLAGLCGEYSLAIRKFE 179


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 293  AAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVA 451
            A   ++ A  +HDA    +DA+    + ++  A   +++ I+I +DM R+ V+
Sbjct: 1090 ATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVS 1142


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 341 NFVDASNCYKKCDANEAVSCLLK 409
           N+ +ASNCY+  D     +C +K
Sbjct: 319 NYREASNCYRALDRTYVQNCRIK 341


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 577 QVHAEAGAVRRPARALRQGHTD 642
           Q+  +AG V+RP + +  GH D
Sbjct: 182 QICRQAGLVKRPTKDVHDGHED 203


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 365 NS*KHLQNWWQHHGEHQLSSGAVLHYR 285
           NS  HL+N +QH  E    SGA   Y+
Sbjct: 65  NSNMHLENQFQHFHEPNKESGAFGSYK 91


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/73 (19%), Positives = 31/73 (42%)
 Frame = +2

Query: 362 CYKKCDANEAVSCLLKAIEIYTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAAD 541
           C    D  E + C  K   +   + R       + NI EL+  +C+++   +QH      
Sbjct: 566 CSALADLYELLMCNEKMSNL---LRRVLKIMSSNDNIDELFLKKCLNINLLLQHLSSEYS 622

Query: 542 YFRGEESTSSANK 580
              G++++++  +
Sbjct: 623 QISGQDASNAQKR 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,696
Number of Sequences: 5004
Number of extensions: 34973
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)