Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28p22
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1083 + 11096520-11096664,11097543-11097592,11097682-110977... 128 4e-30
04_04_1169 - 31446291-31446395,31446789-31446918,31447047-314471... 36 0.021
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101... 29 3.2
11_01_0130 - 1079515-1079685,1079847-1079961,1080237-1080328,108... 29 3.2
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 3.2
11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683... 29 4.2
10_08_0904 + 21464762-21467479 27 9.8
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379... 27 9.8
>08_01_1083 +
11096520-11096664,11097543-11097592,11097682-11097754,
11099122-11099201,11099354-11099505,11100653-11100812,
11100886-11100933,11101118-11101198,11101517-11101597
Length = 289
Score = 128 bits (309), Expect = 4e-30
Identities = 60/148 (40%), Positives = 94/148 (63%)
Frame = +2
Query: 206 EEAVDCYLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDAN 385
E+A D + + AN FK+AK W +A Q + A HLK +H+AA+ +V+A+NCYKK
Sbjct: 30 EDAADLFDKGANSFKLAKNWSRAAQVYIKIANCHLKGDSKHEAASAYVEAANCYKKFSPQ 89
Query: 386 EAVSCLLKAIEIYTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAADYFRGEEST 565
EA L +A++++ ++GR +AA+ ++I E+Y E DL +A + E++AD F E +
Sbjct: 90 EAAQALNQAVDLFLEIGRLNMAARYCKDIGEIYHQE-QDLEKASDYLEKSADLFDSEGQS 148
Query: 566 SSANKCMLKLAQYAAQLEHYDKAIQIYE 649
S +N K+A+ AAQLE Y KA +I+E
Sbjct: 149 SQSNSIKQKVAEIAAQLEQYQKANEIFE 176
>04_04_1169 -
31446291-31446395,31446789-31446918,31447047-31447126,
31447396-31447474,31448178-31448315,31448386-31448522
Length = 222
Score = 36.3 bits (80), Expect = 0.021
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +2
Query: 206 EEAVDCYLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDA- 382
+EA+ Y A ++ + K A + AA L++K DAA F+ + KC+A
Sbjct: 54 DEAIKMYDEACSILEEDGKEQMAFDLYRAAASLYVKLEKYSDAAATFLRLGSAADKCNAI 113
Query: 383 NEAVSCLLKAIEIYTDMGRFTVAAKQHQNIAEL 481
N L AI IY F A K + + +E+
Sbjct: 114 NSQCKGYLSAIIIYLYAHDFQQAQKCYNDCSEV 146
>12_01_0133 -
1011442-1011609,1011792-1011906,1012188-1012279,
1012384-1012469,1012989-1013088,1014139-1014333
Length = 251
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 458 QHQNIAELYETECVDLARAMQHYEQAADYFRGEESTSSANKCMLKLAQYAAQLE 619
+ Q + L + EC +A E+A DY + ++ S+A +C+ K Y Q+E
Sbjct: 63 EDQTLEMLEKKECFLQKKASAEVERAKDYTKA-KNKSAAIQCLKKKKLYETQIE 115
>11_01_0130 -
1079515-1079685,1079847-1079961,1080237-1080328,
1080435-1080520,1080957-1081056,1082180-1082210,
1082416-1082471
Length = 216
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 452 AKQHQNIAELYETECVDLARAMQHYEQAADYFRGEESTSSANKCMLKLAQYAAQLE 619
+K + + L + EC +A E+A DY + ++ S+A +C+ K Y Q+E
Sbjct: 25 SKNPETLEMLEKKECFLQKKASAEVEKAKDYTKA-KNKSAAIQCLKKKKLYETQIE 79
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 453 AATVKRPISV*ISIAFRRQDTASLASHFL*QLEASTKLVAASWRTPAFKWSCAALQKAC 277
A T+ P + + +FR + TA+ S + + VA W+T W+CAA C
Sbjct: 91 ARTLALPATPASACSFRLRATAARDSPLPSLFDEAFPFVAVEWKTIVKGWACAAAAVYC 149
>11_04_0351 +
16666398-16666532,16666911-16667048,16667398-16668306,
16668383-16668511,16668774-16668996,16669085-16669231,
16669332-16669573,16669660-16669689,16669784-16669865,
16669968-16670128,16670775-16670898,16671206-16671414
Length = 842
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 221 CYLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGV-RHDAATNFVDASNCYKKC-DANEAV 394
C A + K P +AF ++ L+ G+ +H+ A N V Y KC D A
Sbjct: 115 CACFVAKVLANRAKAPLEAKAFVRRTKV-LRDGIWKHEDAANLVPGDIIYLKCGDIVPAN 173
Query: 395 SCLLKAIEIYT 427
+C+L +I T
Sbjct: 174 ACVLNMAQIDT 184
>10_08_0904 + 21464762-21467479
Length = 905
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 413 IEIYTDMGRFTVAAKQHQNIAELYE--TECVDLARAMQHYEQAADYFRGEESTSSANKCM 586
IE+ ++M F V K H ELYE + + + + +A + +E S+ C+
Sbjct: 838 IEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPDSASFVEVDEEGSAPEHCL 897
>02_01_0524 +
3798019-3798265,3798419-3798651,3798765-3799014,
3799104-3799249,3799372-3799577,3799721-3799845,
3800154-3800734
Length = 595
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 278 QAFCNAAQLHLKAGVRHDAATNFV--DASNCYKKCDANEAVSCLLKAIEIYTDMGR 439
+A+CNA LH GV + + + +A+ D C KA+E+Y M R
Sbjct: 218 RAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKR 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,194
Number of Sequences: 37544
Number of extensions: 266427
Number of successful extensions: 684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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