Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28p20
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 245 6e-66
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 138 6e-34
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 126 5e-30
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 125 8e-30
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 122 7e-29
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 122 7e-29
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 120 2e-28
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 113 3e-26
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 105 9e-24
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 94 2e-20
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 89 8e-19
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 87 3e-18
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 77 4e-15
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 47 3e-06
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.1
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 26 5.1
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 5.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 6.7
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 8.9
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 8.9
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 245 bits (599), Expect = 6e-66
Identities = 108/149 (72%), Positives = 129/149 (86%)
Frame = +2
Query: 26 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 205
MST ARRRLMRDFKR+Q+DPP GVS +P +N+M+WNAVI GP DTPFEDGTFKL + F
Sbjct: 1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFD 60
Query: 206 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNS 385
E+YPNKPP V+FVS MFHPNVYA+G +CLDILQNRWSPTYDV+AILTSIQSLL+DPN S
Sbjct: 61 EQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNAS 120
Query: 386 PANSMAAQLYKENRREYEKRVKACVEQSF 472
PAN+ AAQL++EN++EY +RV+ VE S+
Sbjct: 121 PANAEAAQLHRENKKEYVRRVRKTVEDSW 149
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 138 bits (335), Expect = 6e-34
Identities = 59/134 (44%), Positives = 87/134 (64%)
Frame = +2
Query: 38 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYP 217
A +R+ R+ L +DPP+ S P +++ W A I GP D+P+ G F L+I F +YP
Sbjct: 2 ALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 218 NKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANS 397
KPP V F ++++HPN+ ++G ICLDIL+++WSP +S +L SI SLL+DPNP+ P
Sbjct: 62 FKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
Query: 398 MAAQLYKENRREYE 439
A +YK +R YE
Sbjct: 122 EIAHVYKTDRSRYE 135
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 126 bits (303), Expect = 5e-30
Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 14/152 (9%)
Frame = +2
Query: 38 ARRRLMRDFKRLQEDPPTGVSGAPT-DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEY 214
A RRLM+++K L E+ P G++ P+ +++ W+ +I GP TPFE G + T++F +Y
Sbjct: 6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 215 PNKPPTVRFVSKMFHPNVYADGGICLDIL-------------QNRWSPTYDVSAILTSIQ 355
P PPT++F + FHPNVY DG +C+ IL RWSP V IL S+
Sbjct: 66 PLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVM 125
Query: 356 SLLSDPNPNSPANSMAAQLYKENRREYEKRVK 451
S+L++PN S AN A ++++E+R EY + V+
Sbjct: 126 SMLAEPNDESGANIDACKMWREDREEYCRVVR 157
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 125 bits (301), Expect = 8e-30
Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Frame = +2
Query: 44 RRLMRDFKRLQEDPPTGVSGAP-TDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPN 220
+RL + L G+S P +D+N++ W I GP DT +E FK+++ F YP
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 221 KPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSM 400
PPT+ F S M+HPNV G ICLDIL+++WS Y+V IL S+QSLL +PN SP N+
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQ 150
Query: 401 AAQLYKENRREYEK 442
AA+L+ ++ EY++
Sbjct: 151 AAELWSKDPIEYKR 164
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 122 bits (293), Expect = 7e-29
Identities = 50/127 (39%), Positives = 81/127 (63%)
Frame = +2
Query: 44 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNK 223
+R++++ + L DPP G+ APT++N+ + + GP + +E G F L + +EYP
Sbjct: 5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMM 64
Query: 224 PPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMA 403
PP VRF++K++HPNV G ICL L+ WSP + +L SIQ+L+ PNP+ P ++
Sbjct: 65 PPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDV 124
Query: 404 AQLYKEN 424
A+++KEN
Sbjct: 125 AKIWKEN 131
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 122 bits (293), Expect = 7e-29
Identities = 60/161 (37%), Positives = 94/161 (58%), Gaps = 14/161 (8%)
Frame = +2
Query: 29 STPARRRLMRDFKRLQEDPPTGVS-GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 205
S+ + + L + K +Q++PP G S G D +I W +I GP DT +E G F T+ F
Sbjct: 3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFP 62
Query: 206 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILQ-------------NRWSPTYDVSAILT 346
++YP PP ++F ++++HPNV+ +G +C+ IL RW P + IL
Sbjct: 63 QDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILI 122
Query: 347 SIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 469
S+ S+LS PN SPAN AA+ ++EN +E++KRV+ V +S
Sbjct: 123 SVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRS 163
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 120 bits (290), Expect = 2e-28
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Frame = +2
Query: 26 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNN-----IMIWNAVIFGPHDTPFEDGTFKL 190
MS+ + RL + K+ + D P G P ++ +M W I G T +E G +KL
Sbjct: 1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 60
Query: 191 TIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL--QNRWSPTYDVSAILTSIQSLL 364
T+ F EEYP +PP RF +FHPNVY G +CL IL + W P + IL IQ LL
Sbjct: 61 TMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 120
Query: 365 SDPNPNSPANSMAAQLYKENRREYEKRVKA 454
DPN SPA + A ++K+++ EYEKRV+A
Sbjct: 121 DDPNIASPAQTEAYTMFKKDKVEYEKRVRA 150
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 113 bits (272), Expect = 3e-26
Identities = 51/143 (35%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Frame = +2
Query: 26 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 205
MS RR+ ++ +Q+D G+ +++I + GP TP+E G F + IE
Sbjct: 1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIP 60
Query: 206 EEYPNKPPTVRFVSKMFHPNVYAD-GGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPN 382
+YP +PP + F +K++HPNV + G ICLDIL+++WSP Y + + L S+QSLL P P+
Sbjct: 61 IDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPS 120
Query: 383 SPANSMAAQLYKENRREYEKRVK 451
+P ++ AQ+Y +N +++ + +
Sbjct: 121 NPQDAQVAQVYLQNYQQFVRTAR 143
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 105 bits (251), Expect = 9e-24
Identities = 47/147 (31%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Frame = +2
Query: 29 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTE 208
S + RRL +++ L+E P + D+N+ W GP D+ + G F +++F
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 209 EYPNKPPTVRFVSKMFHPNVYADGGICLDIL-QNRWSPTYDVSAILTSIQSLLSDPNPNS 385
+YP +PPT+ F ++++HPN ++G +CL IL Q + P+ + ++L I LL +PNP+
Sbjct: 65 DYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDD 124
Query: 386 PANSMAAQLYKENRREYEKRVKACVEQ 466
P + A+ Y+ +R ++K + VEQ
Sbjct: 125 PLVASIAEQYRNDRPSFDKIARDYVEQ 151
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 93.9 bits (223), Expect = 2e-20
Identities = 48/128 (37%), Positives = 77/128 (60%), Gaps = 3/128 (2%)
Frame = +2
Query: 44 RRLMRDFKRLQEDPPTGVS--GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYP 217
+RL +++ Q +G+ TD ++ W AVI GP +TP+E G + L I E YP
Sbjct: 6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYP 65
Query: 218 NKPPTVRFVSKMFHPNV-YADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPAN 394
PP+V F +K+ HPN+ + +G +C+DIL+ WSP + + + +I SLLS+ + +SP N
Sbjct: 66 ISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLN 125
Query: 395 SMAAQLYK 418
AA+L +
Sbjct: 126 VDAAKLLR 133
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 88.6 bits (210), Expect = 8e-19
Identities = 43/149 (28%), Positives = 82/149 (55%)
Frame = +2
Query: 32 TPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEE 211
+PA+ R+ +D L E P T + P + + + I P + ++ G FK I+ +
Sbjct: 22 SPAQIRIQKDVTDL-EIPSTMSTSWPDPIKLNVLHLEI-RPDEGYYKGGKFKFRIQIDDN 79
Query: 212 YPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPA 391
YP+ PP V+ ++K++HPN+ +G +CL+IL+ W+P ++++IL +Q L PN P
Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPL 139
Query: 392 NSMAAQLYKENRREYEKRVKACVEQSFID 478
N AA ++ + + RV+ ++ ++
Sbjct: 140 NKEAAADLHKDPQGFASRVRTAMKGGLVN 168
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 86.6 bits (205), Expect = 3e-18
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Frame = +2
Query: 26 MSTPARRRLMRD-FKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEF 202
MS+P RRR+ D K L D + ++N+ + GP +TP+ G +K+ +E
Sbjct: 1 MSSP-RRRIETDVMKLLMSDYEVTL----VNDNMQEFYVRFHGPSETPYSGGIWKVHVEL 55
Query: 203 TEEYPNKPPTVRFVSKMFHPNV-YADGGICLDILQNRWSPTYDVSAIL-TSIQSLLSDPN 376
EYP K P++ FV+++FHPN+ G +CLD++ WSP +D+ I + LL PN
Sbjct: 56 PSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPN 115
Query: 377 PNSPANSMAAQLYKENRREYEKRVK 451
+ P N AA L Y +V+
Sbjct: 116 ASDPLNGEAAALLLREPNTYYAKVR 140
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 76.6 bits (180), Expect = 4e-15
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Frame = +2
Query: 29 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTE 208
S A +RLM+++ LQ++P V P NI+ W+ +I GP DTP+E G + T+ F
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 209 EYPNKPPTVRFV--SKMFHPNVYADGGICL---DILQNRWSPTYDVSAILTSIQSLLS 367
+YP KPP +R + S F N +CL D W+P++ VS IL + S ++
Sbjct: 63 DYPFKPPAIRMITPSGRFQTNT----RLCLSFSDFHPKSWNPSWMVSTILVGLVSFMT 116
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 46.8 bits (106), Expect = 3e-06
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Frame = +2
Query: 113 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGIC- 289
D + WNA I GP + E+ + L I YP+ PP V FVS++ P V + G
Sbjct: 35 DITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVN 94
Query: 290 ---LDILQNRWSPTYDVSAILTSI-QSLLSDPNPNSP 388
+D L++ W Y + +L + + + S N P
Sbjct: 95 PHKIDCLRH-WKREYSMETVLLDLKKEMASSSNRKLP 130
>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 173 DGTFKLTIEFTEEYPNKPPTV 235
D + +L I+F +YPN PTV
Sbjct: 38 DSSVRLNIQFPLDYPNSAPTV 58
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 284 ICLDILQNRWSPTYDVSAILTSIQSLLSD 370
+CL + P+++ SA TS+ +LSD
Sbjct: 57 LCLSVFSKLQHPSFERSAFFTSVGLILSD 85
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.1
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = +2
Query: 89 TGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIE-FTEEYPNKPPTVRFVSKMFHPN 265
T V G+ ++ ++I IFG D ++G KL + FT P+ P
Sbjct: 33 TYVVGSTSNTRVLIGFMDIFGLSDQ-IKEGADKLADDGFTVYLPDFLEGKPLPVTALPPK 91
Query: 266 VYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPN 382
D +C D R SP + ++++ ++ PN
Sbjct: 92 TPEDQKLCNDFFSTRISPNLHWPKLAKVVEAVRANHGPN 130
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 5.1
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +2
Query: 545 YTCIHWNESVNCKFYYLHTCLDIFSQN 625
+ C+ W E V + +++TC+++ +N
Sbjct: 522 FKCMDWAEKVRLLWEFVNTCINVLYKN 548
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 309 LFCRISRQIPPSA*TFG*NIFDTNRTVGGLFGYSSVNS 196
LF R ++ P++ FD + T+GG+ G +S+++
Sbjct: 396 LFVRNGARLGPTSIYHAWKAFDVDSTIGGMCGKTSIDT 433
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 246 DTNRTVGGLFGYSSVNSIVSL 184
D+ +VG +FG+SSV + VSL
Sbjct: 134 DSGNSVGEIFGHSSVVNAVSL 154
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +2
Query: 50 LMRDFKRLQEDPPTGVSGAPTDNNIMI---WNAV 142
L + +RL P G SG P N +++ W AV
Sbjct: 70 LFQSLRRLNNSSPKGKSGVPKKNIVVLGSGWGAV 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,539
Number of Sequences: 5004
Number of extensions: 69688
Number of successful extensions: 199
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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