Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p19
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    29   4.5  
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    28   5.9  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     28   5.9  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    28   5.9  

>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 688 IHSTCFAYPHLVSLSVPSQSIPRSGLKIFCLATLLKFPESNTEC 557
           IH   F   H +    P++ +P S  +++ L TL   PE++  C
Sbjct: 114 IHGLRFLKNHEIEEMYPNKYLPLSDSRVYVLNTLFNMPETHLIC 157


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 688 IHSTCFAYPHLVSLSVPSQSIPRSGLKIFCLATLLKFPESNTEC 557
           IH   F   H +    P++ +P S  +++ L TL   PE++  C
Sbjct: 100 IHGLRFLKNHEIEEMYPNKYLPLSDSRVYVLNTLFNMPETHLIC 143


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 688 IHSTCFAYPHLVSLSVPSQSIPRSGLKIFCLATLLKFPESNTEC 557
           IH   F   H +    P++ +P S  +++ L TL   PE++  C
Sbjct: 103 IHGLRFLKNHEIEEMYPNKYLPLSDSRVYVLNTLFNMPETHLIC 146


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 372 NLSLMKNNYEDLEIKLSKF-SQELPKLEGQMEIL 470
           NL+ +KN  ED+E+KL KF  + LP LE   +I+
Sbjct: 73  NLNHLKNFDEDIEMKLRKFPGKVLPALEEAAKIV 106


>AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.7 protein.
          Length = 239

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 297 EYHCHTCNTKCDLNGITRNI-NDISRNLSLMKNNYEDLEIKLSKFSQELP-KLEGQMEIL 470
           E H +  ++     G+ R + N + RN S MK    ++    +   Q +  K+E  M+++
Sbjct: 99  ELHDNFKSSDTKQQGLNRKLTNKMERNRSEMKQFKMEMMSSFNGLKQNMDTKMEEMMQLM 158

Query: 471 EALANTVETKDFGWNPNS 524
            AL   + ++    NP S
Sbjct: 159 RALIQDLTSQKLAQNPES 176


>AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.3 protein.
          Length = 239

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 297 EYHCHTCNTKCDLNGITRNI-NDISRNLSLMKNNYEDLEIKLSKFSQELP-KLEGQMEIL 470
           E H +  ++     G+ R + N + RN S MK    ++    +   Q +  K+E  M+++
Sbjct: 99  ELHDNFKSSDTKQQGLNRKLTNKMERNRSEMKQFKMEMMSSFNGLKQNMDTKMEEMMQLM 158

Query: 471 EALANTVETKDFGWNPNS 524
            AL   + ++    NP S
Sbjct: 159 RALIQDLTSQKLAQNPES 176


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +3

Query: 291  MLEYHCHTCNTKCD-LNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEI 467
            +L+   +   TK D ++  +  +  I +N  L +N +    + L   S E+PK+     +
Sbjct: 1254 LLKSRVYDIETKIDHISNSSDEVVQILKNKKLSQN-FAASSLSLPDTSIEVPKIT--KTL 1310

Query: 468  LEALANTVETKDFGWNPNSPLLLNAERIQTHSVFDSGNF 584
            ++   + V  +D      SPLL N +R  T   +D  NF
Sbjct: 1311 IDCHLSPVSIED-RLATRSPLLANLQRDHTLRKYDDANF 1348


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +3

Query: 291  MLEYHCHTCNTKCD-LNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEI 467
            +L+   +   TK D ++  +  +  I +N  L +N +    + L   S E+PK+     +
Sbjct: 970  LLKSRVYDIETKIDHISNSSDEVVQILKNKKLSQN-FAASSLSLPDTSIEVPKIT--KTL 1026

Query: 468  LEALANTVETKDFGWNPNSPLLLNAERIQTHSVFDSGNF 584
            ++   + V  +D      SPLL N +R  T   +D  NF
Sbjct: 1027 IDCHLSPVSIED-RLATRSPLLANLQRDHTLRKYDDANF 1064


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
            protein F11C3.3 protein.
          Length = 1963

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 330  DLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALAN 485
            +L    R + ++   +   K N+E L+  + K  Q+L   + Q+E  E LAN
Sbjct: 1848 NLGRADRRVRELQFQVDEDKKNFERLQDLIDKLQQKLKTQKKQVEEAEELAN 1899


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
            F11C3.3 protein.
          Length = 1963

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 330  DLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALAN 485
            +L    R + ++   +   K N+E L+  + K  Q+L   + Q+E  E LAN
Sbjct: 1848 NLGRADRRVRELQFQVDEDKKNFERLQDLIDKLQQKLKTQKKQVEEAEELAN 1899


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
            protein R06C7.10 protein.
          Length = 1938

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 342  ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA-LANTVETK 500
            + +++ND +  LS  +    DLE +  K  QE+  L+  +E ++  LA ++E K
Sbjct: 922  VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEK 975


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
            R06C7.10 protein.
          Length = 1938

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 342  ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA-LANTVETK 500
            + +++ND +  LS  +    DLE +  K  QE+  L+  +E ++  LA ++E K
Sbjct: 922  VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEK 975


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 342  ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA-LANTVETK 500
            + +++ND +  LS  +    DLE +  K  QE+  L+  +E ++  LA ++E K
Sbjct: 922  VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEK 975


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
            protein.
          Length = 1966

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 330  DLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALAN 485
            +L    R + ++   +   K N+E L+  + K  Q+L   + Q+E  E LAN
Sbjct: 1851 NLGRADRRVRELQFQVDEDKKNFERLQDLIDKLQQKLKTQKKQVEEAEELAN 1902


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,882,184
Number of Sequences: 27780
Number of extensions: 324355
Number of successful extensions: 980
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)