Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28p14
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52297| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 31 0.68
SB_10606| Best HMM Match : I-set (HMM E-Value=0) 31 0.90
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 4.8
SB_1127| Best HMM Match : Acetyltransf_1 (HMM E-Value=9.4e-19) 28 4.8
SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_52838| Best HMM Match : DUF1280 (HMM E-Value=2) 27 8.4
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29) 27 8.4
SB_59573| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 8.4
SB_52945| Best HMM Match : RVT_1 (HMM E-Value=7.2e-19) 27 8.4
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) 27 8.4
>SB_52297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 54.0 bits (124), Expect = 8e-08
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Frame = +1
Query: 145 MLNEIIYREVKHFRNYKIYRPN-FGSI-PVTGKFYAAHDQLKAESEEQTKKVDDYYHNVA 318
+L E I +E ++ + Y Y N F + +TGK + HD A+ EE DD++ V
Sbjct: 20 ILCETIKKEQRNQQLYTSYSVNPFKKMYTLTGKPNSLHDS--ADGEE-----DDHFLKVI 72
Query: 319 QTRAKGPQSKYPSPATENQEYGWYTTPLVKMNRSDKRFYQPKKESENTK 465
+ + P K+ P T Q+ GW T PL+ D+R + P+K SE TK
Sbjct: 73 KRAHETPVDKFDFPQTSAQDIGWNTEPLIDKTWYDQRLHHPRKHSEITK 121
>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
Length = 1671
Score = 31.1 bits (67), Expect = 0.68
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 315 RPDQGEGTTKQISVAGH*EPRVRLVHHTARQNEQER*TFLPAEEGKRKHQNR 470
RP + E TK V +PR R + T +QNE ER + +GKR ++R
Sbjct: 1188 RPVESEADTKPGPVGKSDKPRNR--NDTGKQNELERKGYASESDGKRSSRDR 1237
>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
Length = 872
Score = 30.7 bits (66), Expect = 0.90
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 140 YTCLTRSYTGKSNISGTIKFTDPISDQ 220
YTC R+ GK N + T+ DP+S +
Sbjct: 741 YTCTARNAFGKDNANSTVNVMDPVSPE 767
>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 305 ITTSPRPGRRDHKANIRRRPLRT 373
+T P+PG R H+ IR +PLRT
Sbjct: 937 LTAVPKPGERIHQFAIRLQPLRT 959
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 311 TSPRPGRRDHKANIRRRPLRTKSTAGTPHRSSK*TGAINVSTSRRRKAKTPK 466
T PRP RR ++ + P + + G SS + + + S RR+++ TPK
Sbjct: 1106 TKPRPSRRSLSKSVSKSP--SPARKGKRSSSSSSSRSRSRSPRRRKRSPTPK 1155
>SB_1127| Best HMM Match : Acetyltransf_1 (HMM E-Value=9.4e-19)
Length = 317
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 370 SQWPATDICFVVPSPWSGRRCDSNRPLFSFAPRIRLLADHERRRIYQ*QGLI 215
S+W AT +C PS W+ R + + L R R L R + Q GL+
Sbjct: 10 SEWSATMVCSTHPSAWTANRGEIDNDLLE---RCRNLVTPVRGDLTQLPGLL 58
>SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 297 RLLSQRRPDQGEGTTKQISVAGH*EPRVRLVHHTARQNEQER*TFLPAEEGKRKHQNRN 473
+++ Q R + G KQ + R+V+ AR+ +++ EEGK +HQ+RN
Sbjct: 737 KIMVQERKEDKPG--KQGEKTAKRTQKKRIVYSPARRRDKKLTLSQGKEEGKTEHQDRN 793
>SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 142 HMLNEIIYREVKHFRNYKIYR 204
H ++YR +H+RNY+ YR
Sbjct: 7 HWYFPVVYRSNRHYRNYRHYR 27
>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1496
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 98 VTRNARSAHVWPSTYTCLTRSYTGKSNISGTIKFTDPI 211
V RN S+ YTC+ + G+++ S + TDPI
Sbjct: 353 VLRNVMSSD--SGNYTCIASNVVGRASASTMVNVTDPI 388
>SB_52838| Best HMM Match : DUF1280 (HMM E-Value=2)
Length = 280
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 124 RMAIDIHMLNEIIYREVKHFRNYKIYRPNFGSIPVTGKFYAAHDQLKAESEEQT 285
R+ +D +LNE + RE+ P + + KF AH E +E++
Sbjct: 196 RICLDPRVLNEALQREIYPLPTIDDILPELANAKLFSKFDLAHGYWHCELDEES 249
>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
Length = 1167
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 124 RMAIDIHMLNEIIYREVKHFRNYKIYRPNFGSIPVTGKFYAAHDQLKAESEEQT 285
R+ +D +LNE + RE+ P + + KF AH E +E++
Sbjct: 473 RICLDPRVLNEALQREIYPLPTIDDILPELANAKLFSKFDLAHGYWHCELDEES 526
>SB_59573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 124 RMAIDIHMLNEIIYREVKHFRNYKIYRPNFGSIPVTGKFYAAHDQLKAESEEQT 285
R+ +D +LNE + RE+ P + + KF AH E +E++
Sbjct: 155 RICLDPRVLNEALQREIYPLPTIDDILPELANAKLFSKFDLAHGYWHCELDEES 208
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.5 bits (58), Expect = 8.4
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Frame = +1
Query: 121 TRMAIDIHMLNEIIYREVKHFRNYKIYRPNFGSIPVTGKFYAAHDQLKAESEEQTKKVDD 300
+R+ D + +N RE K ++ ++ + K A Q K++ + KV
Sbjct: 1384 SRLREDFNKVNAEHEREKKELKS--LHNKELQELQNNLKQQLAVVQQKSDKLSEDLKVKI 1441
Query: 301 YYHNVAQTRAKGPQSKYPSPATENQEYGWYTTPLVKMNRSD-KRFYQPKKESENTKIEIV 477
+AQ AK + Y T + LV + RSD +RF + + T ++
Sbjct: 1442 EEVEIAQREAKRTEEHYNELVTRYERENQEGQNLVSILRSDLERFAEERDSLHRTNARLL 1501
Query: 478 ILMSN 492
L+S+
Sbjct: 1502 KLLSD 1506
>SB_52945| Best HMM Match : RVT_1 (HMM E-Value=7.2e-19)
Length = 429
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 124 RMAIDIHMLNEIIYREVKHFRNYKIYRPNFGSIPVTGKFYAAHDQLKAESEEQT 285
R+ +D +LNE + RE+ P + + KF AH E +E++
Sbjct: 12 RICLDPRVLNEALQREIYPLPTIDDILPELANAKLFSKFDLAHGYWHCELDEES 65
>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 362 PLRTKSTAGTPHRSSK*TGAINVSTSRR 445
P++ S TPHRSS G VST +R
Sbjct: 1294 PVKNNSPCTTPHRSSASFGPNRVSTPKR 1321
>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
Length = 1440
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 74 TDINQRWAVTR--NARSAHVWPSTYTCLTRSYTGKSN 178
TD R + R NA VWP C+TR + G +N
Sbjct: 716 TDTQTRQLLLRIANAIQTIVWPGDPICVTRGFVGYAN 752
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,200,663
Number of Sequences: 59808
Number of extensions: 352194
Number of successful extensions: 1162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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