Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p10
         (227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81112-5|CAB03276.1|  245|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z81027-4|CAB02689.1|  245|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set (trithorax/...    25   5.5  
Z81551-2|CAB04482.4|  413|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z81112-5|CAB03276.1|  245|Caenorhabditis elegans Hypothetical
           protein AH10.2 protein.
          Length = 245

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 43  GFVMDICPDIHQTSDTTDAE*TDLSIRLQYMKVEDVFHTLP 165
           GFV D C DI  ++ TT    T   I+    KV  V + +P
Sbjct: 115 GFVGDKCQDIITSTSTTVISTTTTEIKTSTTKVIIVINDVP 155


>Z81027-4|CAB02689.1|  245|Caenorhabditis elegans Hypothetical
           protein AH10.2 protein.
          Length = 245

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 43  GFVMDICPDIHQTSDTTDAE*TDLSIRLQYMKVEDVFHTLP 165
           GFV D C DI  ++ TT    T   I+    KV  V + +P
Sbjct: 115 GFVGDKCQDIITSTSTTVISTTTTEIKTSTTKVIIVINDVP 155


>U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform b protein.
          Length = 552

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 103 IRHLSCLKSDGCRGICPLQSP 41
           +RH SC  +  CRG C +  P
Sbjct: 298 VRHYSCSTNCKCRGKCAISFP 318


>Z81551-2|CAB04482.4|  413|Caenorhabditis elegans Hypothetical
           protein F56A12.2 protein.
          Length = 413

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 45  LCNGHMPRHPSDFRHDRCRMNRFIDQTSIYES*RCLSYAPFGMLTLKT-*FYKNKD 209
           L NGH+ R  S   +  C M+  +  T++      LS  P  +L  +T  FY+++D
Sbjct: 55  LRNGHLNRRMSAALYTLCLMDFMLTMTTVL----FLSIEPLSILLFRTNIFYQHQD 106


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
 Frame = +3

Query: 48  CNGHMPRHPSDFRHDRC--RMNRFIDQT------SIYES*RCLSYAPFGMLTL 182
           CNGH  R   +   D+C  R  R+ D+       SI E  +  +Y P G+L +
Sbjct: 419 CNGHYGRKKREAERDQCLKREKRYADEQCDNDEFSINERSKRQAYNPKGILDI 471


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 227 FFFYESVFIFIKLC 186
           FFF+  VF FIKLC
Sbjct: 42  FFFFIIVFHFIKLC 55


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 227  FFFYESVFIFIKLC 186
            FFFY+  F+FI  C
Sbjct: 1029 FFFYKLYFVFISFC 1042


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,205,560
Number of Sequences: 27780
Number of extensions: 88729
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)