Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p09
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78412-2|CAB01650.1|  169|Caenorhabditis elegans Hypothetical pr...    36   0.022
Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical pr...    32   0.47 
AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical ...    30   1.9  
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z74043-9|CAA98540.1|  524|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF040997-1|AAB97173.1|  524|Caenorhabditis elegans importin alph...    29   4.4  

>Z78412-2|CAB01650.1|  169|Caenorhabditis elegans Hypothetical
           protein M176.3 protein.
          Length = 169

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 418 NPCFQMRTKMIQCYTENPHQPLKCSEAVQAFSNCVAYSRAE 540
           N C     ++++C  ENP + LKC+   +AF  CV   R +
Sbjct: 124 NVCQDNENEIVRCLQENPGRVLKCAPLTEAFEKCVGEFRQQ 164


>Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical
           protein B0391.6 protein.
          Length = 483

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 238 HIPGNK--QQGDGDYWSWRVENLKKEHQLINQIIETEYEKKINSINSICEPPKVTHEKLL 411
           H PGN+  +  D ++W  R E+    H L        Y+K++  +++IC P ++  +  L
Sbjct: 37  HSPGNEIVRFSDAEFWISRFES--GNHDL-------NYDKRLEPLSAICSPIQILRKTAL 87

Query: 412 KLNPCFQMR 438
           +L   F+ R
Sbjct: 88  RLRNVFRPR 96


>AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical
           protein T10B11.8 protein.
          Length = 469

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 340 EYEK-KINSINSICEPPKVTHEKLLKLNPCFQMRTKMIQCYTENPHQPLKCS 492
           +YEK K+N   +I  P KV  E+ L+ NP F +  +  Q   E P +P   S
Sbjct: 208 DYEKPKLNKNGNIRFPKKVMSEEKLE-NPLFHLTFESSQIAVEEPPKPKSTS 258


>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
            T23F2.2b protein.
          Length = 1538

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 283  WRVENLKKEHQLINQIIETEYEKKINSIN 369
            WR+ NL+K++  + + I+   EK + S+N
Sbjct: 981  WRISNLEKDNSELQKQIQPSSEKSLESLN 1009


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
            T23F2.2a protein.
          Length = 1534

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 283  WRVENLKKEHQLINQIIETEYEKKINSIN 369
            WR+ NL+K++  + + I+   EK + S+N
Sbjct: 981  WRISNLEKDNSELQKQIQPSSEKSLESLN 1009


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 277 WSWRVENLKKEHQLINQIIETEYEKKINSINSICEPPKVTHEKLLKLNPCF 429
           WSW +  L    QL    +   Y K +   + +CE P+     +LK   CF
Sbjct: 391 WSWELNELLD--QLDKSWVLNTYCKMVQISDELCEGPQKNIRNVLKKTCCF 439


>Z74043-9|CAA98540.1|  524|Caenorhabditis elegans Hypothetical
           protein T19B10.7 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = -1

Query: 576 NIKLD*AIL-ELIFSS*VCNTITKSLNSFRTL*RLMWIFCVALNHLCPHLE 427
           N+ LD AI+ ELI +S    TI  S+   R+L  L+++FC  L+   PH++
Sbjct: 190 NLALDCAIVSELIDAS----TINMSIILHRSLMWLVFLFCEKLDRCSPHVD 236


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 277 WSWRVENLKKEHQLINQIIETEYEKKINSINSICEPPKVTHEKLLKLNPCF 429
           WSW +  L    QL    +   Y K +   + +CE P+     +LK   CF
Sbjct: 391 WSWELNELLD--QLDKSWVLNTYCKMVQISDELCEGPQKNIRNVLKKTCCF 439


>AF040997-1|AAB97173.1|  524|Caenorhabditis elegans importin alpha 1
           protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = -1

Query: 576 NIKLD*AIL-ELIFSS*VCNTITKSLNSFRTL*RLMWIFCVALNHLCPHLE 427
           N+ LD AI+ ELI +S    TI  S+   R+L  L+++FC  L+   PH++
Sbjct: 190 NLALDCAIVSELIDAS----TINMSIILHRSLMWLVFLFCEKLDRCSPHVD 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,348
Number of Sequences: 27780
Number of extensions: 290751
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)