Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28p07
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 34 0.090
11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59... 32 0.48
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702... 32 0.48
11_02_0146 + 8779249-8780130,8780815-8780970,8781070-8781265,878... 31 1.1
01_01_0595 - 4430738-4430785,4430904-4432679 30 1.5
05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220... 29 4.5
01_06_1124 - 34679205-34680926,34681438-34682811 29 4.5
11_01_0474 - 3666236-3668050 28 5.9
11_01_0593 - 4705565-4705822,4705916-4706065,4706160-4706307,470... 28 7.8
07_03_0347 + 17036086-17036206,17036548-17037173 28 7.8
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 28 7.8
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 34.3 bits (75), Expect = 0.090
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 392 FNKASDKCKDVALSRLSADENSCVKCEKIIDEIFGK 499
F K C+D+AL E++CV C IIDEI K
Sbjct: 131 FCKQYGLCRDMALLSAMKSESTCVFCHHIIDEIMSK 166
>11_01_0075 +
591537-591618,592410-592648,592840-593037,593129-593188,
593313-593456,594655-594819,595611-595709,596057-596125,
596216-596312,596922-597013,597085-597255,598053-598184,
598479-598559,599131-599247,599344-599433
Length = 611
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 392 FNKASDKCKDVALSRLSADENSCVKCEKIIDEIFGK 499
F K C+D+AL E++C+ C IIDEI K
Sbjct: 131 FCKQYGLCRDMALLSAVKSESTCLFCHHIIDEITSK 166
>07_03_1792 +
29569623-29569737,29569848-29569981,29570117-29570284,
29572817-29573003,29573098-29573422,29573591-29574368,
29574897-29575022
Length = 610
Score = 31.9 bits (69), Expect = 0.48
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = +2
Query: 251 ILQSKLQKSTKSGSEDEAKCAKCKKIIDL----VFGPNKPIVHEDSKDAHVFNKASDKCK 418
I+ + + +GS +A+ + K+ +++ P++ DS A V + SD C
Sbjct: 123 IMGLNARDGSDNGSGTQAQSSWTKRAVEIDSPQAMSPDQLADPPDSTCAQVIHLKSDICS 182
Query: 419 DVALSRLSADENSCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNEDLTILPKDNNIGIR 598
+ L ++++NS K ++ D+ GKD + L A + + +I P D
Sbjct: 183 NRWLP-CTSNKNS-KKQKETNDDFKGKDLEIGSPRNLNTAYQSSPNERSIKPTDRRNEYP 240
Query: 599 LDNTDAKNVGEKLKEAAI 652
L N + E L+E+++
Sbjct: 241 LQNNSKEAAMENLEESSV 258
>11_02_0146 +
8779249-8780130,8780815-8780970,8781070-8781265,
8781574-8781599
Length = 419
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +2
Query: 392 FNKASDKCKDVALSRLSADENSCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNEDLTIL 571
F + D+C+D L D V C K + D DD +LG + + N +L
Sbjct: 234 FVRLDDRCEDYCLHSYYGDCGDQVSCGKYCTRFY--DVHDDDCVLLGGLSNVTNLELITS 291
Query: 572 PK 577
PK
Sbjct: 292 PK 293
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 275 STKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSKDAHVFNKASDKCKD 421
S +G ED+ A+ KI + P KPI HE+ K+ + S+ C++
Sbjct: 287 SVANGVEDDYARAEASKIQEKPKIPEKPINHEEIKEQVSKKQRSNTCRE 335
>05_03_0566 -
15521494-15521511,15521550-15521747,15521856-15522037,
15522643-15522721
Length = 158
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 392 FNKASDKCKDVALSRLSADENSCVKCEKIIDEI 490
F ++ C V RL E+SC C +++DEI
Sbjct: 111 FCESVSLCHKVTFIRLPRHEDSCDLCHEVVDEI 143
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 176 NPAAFLFRISLADCNTHGKIAKSIAILQSKLQKSTKSGS 292
+P ++RI L CNTHG +A + I+ KL + S S
Sbjct: 951 DPDPVVWRILLGSCNTHGDVAIA-EIVTKKLNELEPSNS 988
>11_01_0474 - 3666236-3668050
Length = 604
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 NKKNHIPI-QKENENVVFN*SYTHHF*FRYKMWTAAVRTVNKANPAAFLFRISLADC 217
+K+ + P+ + +++ Y H + + K W + T NK P+ F ++ + C
Sbjct: 393 HKRPYYPVVSTRDSHIICFLVYDHDYCVKEKFWKIMLDTTNKTLPSVFAYKNQSSPC 449
>11_01_0593 -
4705565-4705822,4705916-4706065,4706160-4706307,
4706400-4706479,4706573-4706739,4706830-4707078,
4707161-4707733,4707833-4707972,4708064-4708185,
4708622-4708743,4708877-4709105
Length = 745
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 344 GPNKPIVHEDSKDAHVF--NKASDKCKDVALSRLSADENSCVKCEKI 478
G N+P++H D K +++ K D L+ D S + C +
Sbjct: 510 GNNRPVIHRDVKSSNILISQDFEPKLSDFGLALWDTDATSQITCNDV 556
>07_03_0347 + 17036086-17036206,17036548-17037173
Length = 248
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 206 VKYEIEMPPGSLYLPSSPRRSTFC 135
V ++ PPGS+ ++P RS+FC
Sbjct: 32 VACSVQTPPGSIKKATTPMRSSFC 55
>02_04_0490 -
23411742-23412944,23413071-23413595,23413666-23413747,
23413841-23414050,23414371-23414523,23415335-23415447,
23415476-23415622
Length = 810
Score = 27.9 bits (59), Expect = 7.8
Identities = 26/77 (33%), Positives = 37/77 (48%)
Frame = +2
Query: 377 KDAHVFNKASDKCKDVALSRLSADENSCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNE 556
KD + N KC V +RL+ DE K EK++DE+ + + DKY + +L E
Sbjct: 556 KDQDIVNAM--KC--VKSTRLNLDELRREKWEKVLDEV----SDFCDKY---DIVKLEME 604
Query: 557 DLTILPKDNNIGIRLDN 607
D I PK R+ N
Sbjct: 605 DTYIDPKKRRHKSRITN 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,533,054
Number of Sequences: 37544
Number of extensions: 327903
Number of successful extensions: 877
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -