Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p07
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical pr...    31   0.57 
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    31   0.99 
Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.        28   7.0  
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protei...    28   7.0  
Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical
           protein C45G9.8 protein.
          Length = 465

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
 Frame = +2

Query: 164 VNKANPAAFLFRISLADCNTHGKIAKSIAILQSKLQKSTKSGSEDEAKCAKCKK------ 325
           V+  +P + L   +    +TH     S  I +S  +K TK+GS+   +  K KK      
Sbjct: 79  VHHESPDSVLTECATMSTSTHVMPNSSSTISKSATEKKTKTGSKKVTRSKKSKKTKRRSS 138

Query: 326 --IIDLVFGPNKPIVHEDSKDAHVFNKASDKCKD 421
             +       +KP+  +  KD+    K   K KD
Sbjct: 139 TTVTTTTISNSKPVTPDKDKDSKDQRKQRTKRKD 172


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
 Frame = -2

Query: 600 KRIPILLSLGK-IVRSSLGKRVAFPSMYLSSHFASLPKI-SSIIFSHL---TQLFSSALN 436
           KRI  ++ L K  + S+L  + A P +   S+F  +  I +S+I SH    TQ F     
Sbjct: 376 KRILFVMELEKPYLSSNLLSQFAEPILLRLSNFHRVQGILNSLIMSHTILRTQYFEDYQY 435

Query: 435 LDKATSLHLSLALLKTCASLESSCTIGLLGPNTKSIIFLHLA 310
           L   T   L++    + ++  S+     L P T  +IF H++
Sbjct: 436 LLSGTETFLAILEKSSVSNPLSAIQCSKLSPETLQLIFHHIS 477


>Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical
           protein K05C4.9 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 465 LTQLFSSALNLDKATSLHLSLALLKTCASLESSCTIGLLGPNTKSI 328
           L++LF S   L+ +  L  +  LL+ C S  S C + + G N  S+
Sbjct: 151 LSELFPSLKTLNVSNILFENDELLRLCVSFPSLCVLDISGTNIASL 196


>Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical
           protein K09B11.10 protein.
          Length = 739

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 505 CVFTKDLINYLLAFNTTIFIGT*SR*SNIFAFIAGFVENMCIF 377
           C FTKD  N  + ++  +  G   R SN+F    G   N+ +F
Sbjct: 452 CDFTKDYCNQWVNYDGVVKYGVMPRDSNVFPVPKGVKGNVAVF 494


>Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical
           protein C27D8.2 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = +2

Query: 200 ISLADCNTHGKIAKSIAILQSKLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSK 379
           ++ A  N H  +  S      K++K  +  ++     A  +++IDL+    K +  E S 
Sbjct: 294 MNTAPFNAHSSLPLSRPAFNMKMKKCKEPKAKPTFDPATAQRVIDLINTDPKTVKTERSV 353

Query: 380 DAHVFNK--ASDKCKDVALSRLSADENSCVKCEKIIDEIFGKDAK 508
           + + F K    +K     +S+ +  ++ C   E + +++  K  K
Sbjct: 354 EKNKFKKKQKEEKKAKKQISKSTKKKSKCACIEYVKNKLTEKKKK 398


>U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 317 CKKIIDLVFGPNKPIVHEDSKDAHVFNKASDKCKDVALSRLSADENSC 460
           C  +I L  G +   V+ED  +  +  + SD  +DV  + LS D ++C
Sbjct: 185 CDMLISL--GIDSRTVYEDEFERPLLKETSDYYRDVCKNWLSGDNDAC 230


>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
           protein Y92H12A.5 protein.
          Length = 1375

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 437 LSADENSCVKCEKIIDEIFGKDAKWD 514
           LS    S V C+ I+D IF +D  WD
Sbjct: 182 LSNPSFSSVICQLIVDNIFDRDELWD 207


>AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protein 3
           protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 317 CKKIIDLVFGPNKPIVHEDSKDAHVFNKASDKCKDVALSRLSADENSC 460
           C  +I L  G +   V+ED  +  +  + SD  +DV  + LS D ++C
Sbjct: 185 CDMLISL--GIDSRTVYEDEFERPLLKETSDYYRDVCKNWLSGDNDAC 230


>Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical
           protein K03D3.4 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 653 KWRLLLISPQRFSHQYCLNVFRYCC 579
           +W   +IS Q++ H+Y + V+  CC
Sbjct: 137 RWEKTVISIQKYIHKYIVFVYLACC 161


>AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical
           protein H14E04.1 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 189 FYFVFHSPTAIHTVKLPKVLRFCKANYKRAQR 284
           F ++  SP   HT+++ ++LR   A +K+  R
Sbjct: 271 FMWLVSSPVIDHTIRMAEILRILPAGFKQFNR 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,860
Number of Sequences: 27780
Number of extensions: 323332
Number of successful extensions: 1106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)