Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p06
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical pr...    28   2.9  
X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein ( Caeno...    27   5.1  
U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical ...    27   5.1  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical
           protein C08F8.9 protein.
          Length = 55

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 339 LEAIHNDPFNWNLFKSLTFFFLGL 410
           +  ++NDPF W++FK +  F +G+
Sbjct: 18  VNTVYNDPFFWSVFKGVIGFGVGV 41


>X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc1. ).
          Length = 273

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 KAYIRWGLEQWHSHI 208
           KA++RWG ++W  HI
Sbjct: 70  KAHLRWGRQEWAKHI 84


>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 KAYIRWGLEQWHSHI 208
           KA++RWG ++W  HI
Sbjct: 111 KAHLRWGRQEWAKHI 125


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 KAYIRWGLEQWHSHI 208
           KA++RWG ++W  HI
Sbjct: 140 KAHLRWGRQEWAKHI 154


>AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical
           protein Y39F10A.4 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 KAYIRWGLEQWHSHI 208
           KA++RWG ++W  HI
Sbjct: 140 KAHLRWGRQEWAKHI 154


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 KAYIRWGLEQWHSHI 208
           KA++RWG ++W  HI
Sbjct: 70  KAHLRWGRQEWAKHI 84


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 KAYIRWGLEQWHSHI 208
           KA++RWG ++W  HI
Sbjct: 70  KAHLRWGRQEWAKHI 84


>AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical
           protein T07D3.8 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 KAYIRWGLEQWHSHI 208
           KA++RWG ++W  HI
Sbjct: 140 KAHLRWGRQEWAKHI 154


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 234  PSEYRLSFTSPLTTDLC*IRFNGLCEGGLFECLQHLEAIHNDPFNWNLF 380
            P    L  T P+   +C    NG+ E  L   L+  E IH + F+  LF
Sbjct: 6171 PVSSELEETKPVRFTVCDGSLNGISEPVLVYLLRKSEDIHKNYFDVELF 6219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,594,936
Number of Sequences: 27780
Number of extensions: 158566
Number of successful extensions: 341
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)