Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28p05
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 33 0.038
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.61
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.81
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 29 0.81
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.81
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 1.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 3.3
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 4.3
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 4.3
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 26 4.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 5.7
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 26 5.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.7
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.7
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 5.7
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 7.6
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 25 7.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 7.6
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 10.0
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 33.1 bits (72), Expect = 0.038
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +1
Query: 298 RRNECLDNLAKLERQFTVLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENM--R 471
+R E D L +E +FT LR +LY +++ ++ ++ + + + + E R
Sbjct: 304 KRKEAFDALLNIETEFTFLRNRLYGKKLLKLNEHEEMIQNETHERFNACIDLITERRDDR 363
Query: 472 IRIEVAGILKQM-RIENI 522
+R+ ++KQ+ I+N+
Sbjct: 364 VRLATENLMKQLGNIKNV 381
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 499 KQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEE 642
K R K K EAEE A + + K A EN K + EK+++ EE
Sbjct: 648 KAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEE 695
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 523 KHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEER 645
K K EAEE+A + + K A EN K + EK ++ EE+
Sbjct: 576 KAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEK 616
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 499 KQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEER 645
K R K K EAEE+A + ++ K A E K + EK ++ EE+
Sbjct: 576 KAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEK 624
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 499 KQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEER 645
K R K K EAEE+A + + K A E K + EK ++ EE+
Sbjct: 608 KAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 656
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 475 RIEVAGILKQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEER 645
RI+ + R K + EAEE A + + K A E K + EK ++ EE+
Sbjct: 536 RIQEKAEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEK 592
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 499 KQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEER 645
K R K K EAEE A + + K A E K + EK ++ EE+
Sbjct: 584 KAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEK 632
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 529 KFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEE 642
K EAEEQA + + K A E K + EK ++ EE
Sbjct: 562 KREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEE 599
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 376 RVKQVEYQLAEVRGGRSQEYLGPLRRLQENMR 471
R++++E+QL + GR ++ LG RLQ+ +R
Sbjct: 1056 RLREMEFQLKAEQEGRKRDKLGARERLQDLIR 1087
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 402 GRSEGWSLPGISRSTSKTAGEYENQNRSSRHTQANEDREHKT 527
G ++ W RSTSK N S+++ R+HKT
Sbjct: 419 GSTQEWHSHTTPRSTSKHENNLNNITNSAKNEHIRSQRQHKT 460
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 28.7 bits (61), Expect = 0.81
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +1
Query: 463 NMRIRIEVAGILKQMRIENIKHKFEAEEQAAHQHFKS---EKWLAYENLKEDILEKIRKL 633
N I I+V +Q R + +K + E + + K +K++ + KE++ I KL
Sbjct: 53 NAEILIDVPKEERQKRKQELKDQLLKENEGSISSKKKKRLDKYIENKLKKEEVASLIAKL 112
Query: 634 EEERHTVDLWSSA 672
EER L SS+
Sbjct: 113 AEERIDTSLLSSS 125
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 544 EQAAHQHFK--SEKWLAYENLKEDILEKIRKLEEERHTVD 657
+Q H+ K EKW++ + +++ K R L++ERH ++
Sbjct: 346 QQILHKQNKIIEEKWISQIRISKNLEVKQRLLDQERHALE 385
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 36 ILQFTNWSENTIHYKIKINS 95
+L+F WS+ HYK+ +NS
Sbjct: 239 LLEFEFWSQAAQHYKLDVNS 258
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 4.3
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = -2
Query: 582 PLFTLEMLVCCLFFSLKLVFYVLDPHLLEYAGYFDSDSHILLQSSKWTEIFLGATTPHFG 403
PL + ++C F S+ L+F+++ P +L Y G + S+ +L SS + + +
Sbjct: 399 PLASPWWVICNTFGSVVLIFWIVVP-ILYYKGVWFSNYLPMLSSSTFDHTGVSYNSSRVL 457
Query: 402 QLIFNLLHSLYVQLFSKHSELSLKFC*VIETFVS-ASLTLAFVH 274
++ H+ Y +S L + + T ++ A++T F H
Sbjct: 458 NSDYSFNHTKY----ESYSPLYMPMSYSMSTALNFAAVTAIFTH 497
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/51 (17%), Positives = 27/51 (52%)
Frame = +1
Query: 412 RGGRSQEYLGPLRRLQENMRIRIEVAGILKQMRIENIKHKFEAEEQAAHQH 564
RG R ++ GP+ +++N+R++ ++ + + + + K + + + H
Sbjct: 213 RGRRKRKMRGPILPVKKNLRVKKAMSPLRAERNSPDFRRKLRSRDNRPNYH 263
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 445 VDRDIPGSDHPSLRPVDIQLASLSLRTIVLEAQ*TVSQVLLSYRDIRFCVSHTRL 281
++ DI + P+ QLASL+ I + Q V +D +FC H L
Sbjct: 256 INWDIENAIQKYFNPLIEQLASLAKLNIETQIQYFVEDAEAYIKDDKFCTKHADL 310
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 294 LTLAFVHFRRIVGVRLVSFLSARVPVWATGRAPRSFGITPRHFSISITIAF 142
LT+ F F +G+ VS +AR+P R SF +H S+ + F
Sbjct: 54 LTIVFSAFASFLGLYFVSQCAARLP-----RGKASFAAVAKHTFPSLAVVF 99
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 5.7
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = -2
Query: 474 DSHILLQSSKWTEIFLGATTPHFG--QLIFNLLHSLYVQLFSKHSELSLKFC*VIETFVS 301
DS +++ + + I + + +++ ++ Y +L ELS F +IE +
Sbjct: 386 DSSVIISEATFVNIITKVSRAYSKCLKVLLGIIAPNYTRLLELDRELSNFFKELIEVNIP 445
Query: 300 ASLTLAFVHFRRIVGVRLVSFLSARVPV 217
S T+ H R LVS+LS R P+
Sbjct: 446 TSNTMHERHIR-----LLVSYLSNRFPI 468
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 603 F*ILVRQPLFTLEMLVCCLFFSLKLVFYVLDPHLLEYAG 487
F + VRQ LF + + F + L+ DP L Y G
Sbjct: 303 FPVAVRQTLFRIAIFYILSLFIVSLLISGADPRLTSYHG 341
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 493 ILKQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEERHTVDL 660
+ +++ +E++K + FKS K LAY L + KL EE+ +++
Sbjct: 589 LFRRLLVESLKGFSYYQTDEKTGVFKSSKNLAYSQLDSSLTTNPSKLLEEKELLEM 644
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.7
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +1
Query: 421 RSQEYLGPLRRLQENMRIRIEVA--GILKQMRIENIKHKF-EAEEQAAHQHFKSEKWLAY 591
R Q L + +EN + A G+ M++ ++ + +A E+ H + +
Sbjct: 360 RIQVLTADLEKEKENQIMHESEASIGLTDSMQVHTLQEQLHKANEEIEFLHDQISRMNEE 419
Query: 592 ENLKEDILEKIRKLEEERHTVD 657
EDI+ + R LEEER ++
Sbjct: 420 GKNFEDIMLQFRSLEEERDVLE 441
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 331 VLLSYRDIRFCVSHTRLRPFPKNR 260
V+L Y RFC+S LRP +R
Sbjct: 17 VILFYAKNRFCISIDHLRPLKSHR 40
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 514 ENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEK-IRKLEEERHTVDLWSSA 672
EN+KH+FE + + + ++ L + K+D LEK I++ E ++ SA
Sbjct: 122 ENLKHQFEDQIEKLNSEISNQNSLILQ--KKDELEKSIQRCSELEEKINSLESA 173
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 499 KQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDIL----EKIRKLEEER 645
K++ ++K + +EQ A++++K ++ KE+ L EK+R+ E R
Sbjct: 37 KELSDASVKSSYVDQEQQAYENWKKQEQEEINRKKEEELKSKFEKLRQKNERR 89
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 498 EYAGYFDSDSH-ILLQSSKWTEIFLGATTPHFGQLIFNLLHSLYVQLFSKHSELSLK 331
++ G FD D H + + S + PH LL LY +F+K+ E SLK
Sbjct: 223 KFFGIFDWDPHGLCIYSCFKYGSNAYSHEPHSQLRNLQLLGPLYEDIFNKNQEFSLK 279
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.6
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 454 LQENMRIRIEVAGILKQMRIENIKH-KFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRK 630
LQ + I + I K E+IK+ + E Q SEK L N + D+LE RK
Sbjct: 29 LQVDAFTSILIPLISKSKDYESIKNDRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDERK 88
Query: 631 LEE 639
L E
Sbjct: 89 LLE 91
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 7.6
Identities = 27/118 (22%), Positives = 48/118 (40%)
Frame = -2
Query: 576 FTLEMLVCCLFFSLKLVFYVLDPHLLEYAGYFDSDSHILLQSSKWTEIFLGATTPHFGQL 397
+ L +L F S+K + +LD + +L + + G + Q
Sbjct: 956 YQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQE 1015
Query: 396 IFNLLHSLYVQLFSKHSELSLKFC*VIETFVSASLTLAFVHFRRIVGVRLVSFLSARV 223
++ LLH + LF H+E S F IE+ ++ L +R+ + L F+ RV
Sbjct: 1016 LWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMI-LKPFMLRRV 1072
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 487 AGILKQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKI--RKLEEERHTVD 657
AGI R ++ +A + A + E Y+N+ E+ KI ++L+E+ VD
Sbjct: 6 AGIKPSQRFAELRALRQAGKTRASTYESKENEELYDNVSEEEYRKIVRQRLDEDDFVVD 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,453
Number of Sequences: 5004
Number of extensions: 50458
Number of successful extensions: 213
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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