Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28p05
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 32 0.43
U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related... 32 0.43
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 32 0.43
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 32 0.43
AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical... 29 4.0
Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical pr... 28 5.3
U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical pr... 28 7.0
U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical pr... 27 9.2
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 27 9.2
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
protein T06E4.1 protein.
Length = 1295
Score = 31.9 bits (69), Expect = 0.43
Identities = 26/111 (23%), Positives = 55/111 (49%)
Frame = +1
Query: 328 KLERQFTVLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMRIRIEVAGILKQM 507
K ER+ EQL +R++++E +L E G + Q E ++ R E K +
Sbjct: 278 KSEREAAKTLEQLLEKRIEELEMKLTEPNGEKLQ-----FEHQLEELKSRCEEL-TDKAL 331
Query: 508 RIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEERHTVDL 660
+++ ++H E E +K++ + +KE+ E+++K +E+ T+ +
Sbjct: 332 KVDVMQHSIEDYE---------KKFVELQEMKEEADEQLQKAKEDIETLQM 373
>U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related
family protein 1 protein.
Length = 956
Score = 31.9 bits (69), Expect = 0.43
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = -2
Query: 561 LVCCLFFSLKLVFYVLDPHLLEYAGYFDSDSHILLQSSKWTEIFLGATTPHFGQLIFNLL 382
++ C+ FS+ L ++ Y G + + L++ W +FLGA++ G L+ L+
Sbjct: 833 VIMCIGFSVDLSAHIAYAFSQSY-GNSHARAVAALETLGWP-VFLGASSTVLGILLLTLV 890
Query: 381 HSLYVQLFSKHSELSLKF 328
S VQ+F K L + F
Sbjct: 891 DSYIVQIFFKTVFLVINF 908
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 31.9 bits (69), Expect = 0.43
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +1
Query: 298 RRNECLDNLAK-LERQFTVLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMR- 471
+R E LD + K LE Q+ L ER++ + Q E R + QEY R MR
Sbjct: 331 QRVEALDEIVKHLEYQWAELSHMKDFERIRFRKNQTEEYRALKIQEYPETPRNPHFYMRH 390
Query: 472 -IRIEVAGILKQMR 510
+ I+V G++++ R
Sbjct: 391 ALDIDVIGVMREFR 404
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 31.9 bits (69), Expect = 0.43
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +1
Query: 298 RRNECLDNLAK-LERQFTVLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMR- 471
+R E LD + K LE Q+ L ER++ + Q E R + QEY R MR
Sbjct: 331 QRVEALDEIVKHLEYQWAELSHMKDFERIRFRKNQTEEYRALKIQEYPETPRNPHFYMRH 390
Query: 472 -IRIEVAGILKQMR 510
+ I+V G++++ R
Sbjct: 391 ALDIDVIGVMREFR 404
>AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical
protein K11D12.9 protein.
Length = 400
Score = 28.7 bits (61), Expect = 4.0
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Frame = +1
Query: 328 KLERQFTVLREQL-YVERVKQV---EYQ-LAEVRGGRSQEYLGPLRRLQENMRIRIEVAG 492
+++ QFT+L+ ++ ++E K+ E Q L + Q+ + M R+E A
Sbjct: 130 EVDSQFTILKNRINHLENEKEQCLSEVQELKRLLEDSEQDLKDCKDEMNRLMEERVETAD 189
Query: 493 ILKQMRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEERHTVDL 660
L ++ I+N + + E +Q + +K + E ++D E+I L++++ V++
Sbjct: 190 ALDKLTIQNYRQQQEIHDQKELSEHR-KKIYSEEKARKD--EEILNLQKQKTDVEM 242
>Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical
protein T05A10.3 protein.
Length = 406
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +1
Query: 334 ERQFTVLREQLYVERVKQVEYQ---LAEVRGGRSQEYLGPLRRLQENMRIRIEVAGILKQ 504
E +F + EQ ++ ++++E + L E+R ++ R QE + RIE+ ++
Sbjct: 235 EERFRLEEEQKRLDEIRRLEEESLRLEEIRRIEEEKKRIEEIRRQEEEQQRIELERREEE 294
Query: 505 MRIENIKHKFEAEEQAAHQHFKSEKWLAYENLKEDILEKIRKLEEER 645
R+E+ + E ++ + ++ E+ + +E+ + E+ER
Sbjct: 295 RRLESERRAEEERKREEEAKLQEQRRREQEDEHKRRMEEYHRREQER 341
>U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical
protein F59C12.3 protein.
Length = 519
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 370 VERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMRIR--IEVAGILKQMRIE 516
+ +++Q+EY A + + EYL R+ QEN+ + I++ +K++ IE
Sbjct: 155 LSKLQQIEYSYARLE--KEYEYLANERKKQENLELNVIIQLEKSVKKLTIE 203
>U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical
protein R13A1.10 protein.
Length = 226
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 282 FVHFRRIVGVRLVSFLSARVPVWATGRAPR 193
F HFR +GV ++ F S+ +P+W P+
Sbjct: 58 FKHFRSAIGVEIIEFESS-LPMWLVHLNPK 86
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
protein T23F2.2b protein.
Length = 1538
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Frame = +1
Query: 430 EYLGPL-RRLQENMRIRIEVAGILKQMRIENIKH---------KFEAEEQAAHQHFKSEK 579
EY+ P RR +E +++ E+ L + R E KH + E + + + +K
Sbjct: 194 EYITPTQRRNKELAQLKKELRQALSE-RDEKDKHLSDLRDKVKEIEIFNETQNTLAEGQK 252
Query: 580 WLAYENLKEDILEKIRKLEEERHTV 654
+ E ++++ LEK +KL E++H V
Sbjct: 253 MMRKEQIEKEALEKEKKLLEKKHAV 277
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
protein T23F2.2a protein.
Length = 1534
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Frame = +1
Query: 430 EYLGPL-RRLQENMRIRIEVAGILKQMRIENIKH---------KFEAEEQAAHQHFKSEK 579
EY+ P RR +E +++ E+ L + R E KH + E + + + +K
Sbjct: 194 EYITPTQRRNKELAQLKKELRQALSE-RDEKDKHLSDLRDKVKEIEIFNETQNTLAEGQK 252
Query: 580 WLAYENLKEDILEKIRKLEEERHTV 654
+ E ++++ LEK +KL E++H V
Sbjct: 253 MMRKEQIEKEALEKEKKLLEKKHAV 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,029
Number of Sequences: 27780
Number of extensions: 278039
Number of successful extensions: 1108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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