Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p03
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical pr...    31   0.27 
Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.27 
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   0.83 
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   0.83 
U88310-3|AAB42337.1|  608|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z81557-11|CAB04531.2|  319|Caenorhabditis elegans Hypothetical p...    27   3.4  
U50311-15|AAA92317.1|  281|Caenorhabditis elegans Hypothetical p...    26   7.8  

>Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 50  TLFSCKFVCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQN 181
           TLF C   C + R   M +    V+  N+T+ H +   + S ++
Sbjct: 128 TLFECGSFCASFRHSDMFNSGVFVLKTNETVFHDMEQHVASAES 171


>Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 50  TLFSCKFVCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQN 181
           TLF C   C + R   M +    V+  N+T+ H +   + S ++
Sbjct: 128 TLFECGSFCASFRHSDMFNSGVFVLKTNETVFHDMEQHVASAES 171


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +2

Query: 56   FSCKFVCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQNNV----NALQEFQKDVNL 223
            F  +F+   H +R+ + E ++ ++I    +     ++K  Q ++    N LQE ++  NL
Sbjct: 3122 FIKQFMSLFHEKRSDLEEEKIHLNIGLNKISETEEQVKELQKSLKLKSNELQEKKEAANL 3181

Query: 224  LLTKMIGD 247
             L +M+GD
Sbjct: 3182 KLKEMLGD 3189


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +2

Query: 56   FSCKFVCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQNNV----NALQEFQKDVNL 223
            F  +F+   H +R+ + E ++ ++I    +     ++K  Q ++    N LQE ++  NL
Sbjct: 3122 FIKQFMSLFHEKRSDLEEEKIHLNIGLNKISETEEQVKELQKSLKLKSNELQEKKEAANL 3181

Query: 224  LLTKMIGD 247
             L +M+GD
Sbjct: 3182 KLKEMLGD 3189


>U88310-3|AAB42337.1|  608|Caenorhabditis elegans Hypothetical
           protein C24G7.1 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 113 QLVVSINDTILHTLTNEI-KSGQ---NNVNALQEFQKDVNLLLTKMIGDLLHSGNNEMVE 280
           Q+ +     I  T  NE+ K+GQ   N +N +  +  +V +L+      LLH GN ++ E
Sbjct: 135 QITICNFTPIRKTFVNEMNKTGQISPNMINYIMHWFTEVPILIGSSNWQLLHEGNKDLQE 194


>Z81557-11|CAB04531.2|  319|Caenorhabditis elegans Hypothetical
           protein F59A1.7 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 71  VCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLT--KMIG 244
           V F HRE+   ++  L +++ND  +       +    N +AL E    V  +++  K + 
Sbjct: 96  VQFNHREKRCFTKNALKIALNDVTVLIENPHFQLSHFNFSALDEDTAAVETVMSWFKSVS 155

Query: 245 DLLHSGNNEMVEDEYCSTD 301
           D       E +  E C+ D
Sbjct: 156 DSKKLWKVEKITLEACNCD 174


>U50311-15|AAA92317.1|  281|Caenorhabditis elegans Hypothetical
           protein C25E10.12 protein.
          Length = 281

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 177 WPDLISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQLNNVYFYLP 34
           W   +    VC  +  M     I +  VR +C+  T+ +L+ +  Y+P
Sbjct: 19  WKKYVKQGRVCEPIKPMRLDTPIFENKVRFVCISDTHEKLHEILPYIP 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,237,032
Number of Sequences: 27780
Number of extensions: 153980
Number of successful extensions: 400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)