Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p02
         (171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    23   4.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      23   5.4  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    22   9.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    22   9.4  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 1   DYLFRHNTTTTKLELS 48
           DYLFRHN+    L +S
Sbjct: 396 DYLFRHNSCARDLVMS 411


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -1

Query: 168 FFYYYSLFIVLKQIIISFNVILLINITLYVHTISI 64
           FF+Y+SLF     +  S +      +  + H + I
Sbjct: 110 FFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLLDI 144


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 156 YSLFIVLKQIIISFNVILLINITLYVHTIS 67
           ++LFI+   III+   I LI+  L++ ++S
Sbjct: 141 FNLFIIFSPIIITLPFIALISF-LHLRSLS 169


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 168 FFYYYSLFIVLKQIIISF 115
           FF + SLF V+  II+SF
Sbjct: 551 FFLFDSLFEVIISIILSF 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,519
Number of Sequences: 5004
Number of extensions: 7456
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)