Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p02
         (171 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    28   0.77 
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        28   0.77 
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    25   9.5  

>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 171  FFFYYYSLFIVLKQIIISFNVILLINITLYVHT 73
            +F++YY L I+L  III   VIL++ I + +HT
Sbjct: 1992 YFWHYYGLQILLWLIII---VILILTIFVLLHT 2021


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 171  FFFYYYSLFIVLKQIIISFNVILLINITLYVHT 73
            +F++YY L I+L  III   VIL++ I + +HT
Sbjct: 1992 YFWHYYGLQILLWLIII---VILILTIFVLLHT 2021


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 171 FFFYYYSLFIVLKQIIISFNVILLINI 91
           +F+ YY +  ++   +I F++I + NI
Sbjct: 190 YFYLYYGIRAIIFDALIPFSIIAVTNI 216


>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 160 LLQFVYCFKTNYNKL*CNPFN*YNAICTYYFHFFIFLMTVLI 35
           +  + Y F++  + L  N F        + ++FF+FL  +LI
Sbjct: 124 ICSYTYLFESRSSSLPQNRFRISRRKIKFLYYFFVFLPFILI 165


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 162 YYYSLFIVLKQIIISFNVILLINIT 88
           +Y  L +V +  IISFNV+L I  T
Sbjct: 48  FYKWLILVFQLAIISFNVLLTILCT 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,806
Number of Sequences: 27780
Number of extensions: 41535
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)