Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28p02
         (171 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   0.34 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   2.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   2.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    19   4.2  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    19   5.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    19   5.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    19   7.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    19   7.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   7.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               18   9.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    18   9.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 148 VYCFKTNYNKL*CNPFN*YNAICTY 74
           V C   N   + C PF  Y  +C Y
Sbjct: 137 VECIVFNSGTILCVPFTTYTPVCEY 161


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 169 FFLLLQFVYCFKT 131
           +FLL+ F YC  T
Sbjct: 309 WFLLMSFGYCIAT 321


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 79  YI*RYIN*KDYIKAYYNL 132
           Y   Y N  +Y K YYN+
Sbjct: 313 YSNNYYNNNNYKKLYYNI 330


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 151 FVYCFKTNYNKL*CNPFN*YNAICTYYFHFFI 56
           + Y    NYN    N +N YN    YY ++ I
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNK-KLYYKNYII 352


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 86  YMYILFPFLYFLDDSSN 36
           YMY L      +DD +N
Sbjct: 73  YMYCLLEAFSLVDDEAN 89


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 86  YMYILFPFLYFLDDSSN 36
           YMY L      +DD +N
Sbjct: 73  YMYCLLEAFSLVDDEAN 89


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 6   LISSQHYNYQ 35
           +ISS +YNY+
Sbjct: 303 IISSNNYNYK 312


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 6   LISSQHYNYQ 35
           +ISS +YNY+
Sbjct: 314 IISSNNYNYK 323


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 156 YSLFIVLKQIIISF 115
           YS+ I L  + ISF
Sbjct: 572 YSIMIFLSAVFISF 585


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 170 FFFITTVCLLF 138
           FFFI  + L+F
Sbjct: 7   FFFILVITLIF 17


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 13  RHNTTTTKLELSSRK 57
           R   TTT+  +SSRK
Sbjct: 795 RKTATTTQPVISSRK 809


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,775
Number of Sequences: 438
Number of extensions: 621
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)