Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o19
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    29   0.88 
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.7  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   2.7  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   8.2  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   8.2  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   8.2  

>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 401 GVDTFSHSAGRSVGLASLLHGGRPAVLPGDAGGV 502
           GVDT  HSA  ++G   + HG R  VL  + G +
Sbjct: 555 GVDTPKHSATLTMGKVGVFHGVRTYVLQREDGQI 588


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 453 SDASPTLRPAEWLNVSTPLWAPQ 385
           S  SP+L P  W N +  LW  Q
Sbjct: 129 SSPSPSLNPESWTNFANMLWLDQ 151


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 399 EELIRSATLLVEALGLRRYYMEAAQQSFPETLVEFFSGHGSPRRMLD-KHKESMDFTRAL 575
           E+LI      +  L   RYY+E  Q    +  V +FS   S   + D    +++      
Sbjct: 515 EDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWSTDELADISETKNLVGHDTK 574

Query: 576 LNLDSMAAEQYLQLTTCSSEEFQQR 650
            N  S++++  + L T  +E  +++
Sbjct: 575 TNRSSLSSKHEVDLFTAENEAAREK 599


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 150  LISTKFIYRKTKNYNVSNTFRMFGTHKEYKKWSRSRSEAN 269
            ++  K I +K     + + FR  GT  E +KW  S SEAN
Sbjct: 1254 VLHIKAIAKKIDEMCIHDKFRK-GTQAETEKWLESYSEAN 1292


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 78  FVCSK*NGIKCYCYLYIF*K*IRDLISTKFIYRKTKNYNVSNTFRMFGTHKEYKKW 245
           FVC K +GI+C  Y+    +   +  S     RK   Y+V   F      K  KK+
Sbjct: 63  FVCEKSDGIRCLLYMTEHPR-YENRPSVYLFDRKMNFYHVEKIFYPVENDKSGKKY 117


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 410 YQLLYGHPSDMYTGDGDSLERDLVVGTAPRAV 315
           Y+LL GH  ++Y+ D     + LV G+  R V
Sbjct: 369 YRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTV 400


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 294  CASLRPHYRSLRSEIS-TIFYIPYVFRTS*MY*IRYNFWFYDI*IWLKLNLLFIFKIYKD 118
            C   RP+YR++  +++ T F+I      +  + + Y  +   + + +  +  F FK    
Sbjct: 892  CCDERPYYRTMEGDLAKTYFFIEDEGDGTYKFKLTYGAFSEYLDVKILADSTFFFKAMDS 951

Query: 117  NSSTL 103
            +SST+
Sbjct: 952  SSSTI 956


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,046
Number of Sequences: 5004
Number of extensions: 63489
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)