Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28o19
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0068 - 27469929-27471050 34 0.099
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 31 0.70
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 31 0.92
03_02_0187 - 6248226-6249226,6249296-6250148 31 1.2
12_02_1102 + 26088927-26090321 29 4.9
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202... 29 4.9
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 29 4.9
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 28 6.5
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 28 6.5
04_04_0974 + 29831274-29833184 28 8.6
02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718... 28 8.6
>05_07_0068 - 27469929-27471050
Length = 373
Score = 34.3 bits (75), Expect = 0.099
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 344 GPVPESLRRRYTY-HWGAHRGVDTFSHSAGRSVGLASLLHGGRPAVLP 484
G V SL R+ + H G +R V T SAG + +A L GGRPA P
Sbjct: 22 GSVASSLLSRFYFTHGGRNRWVVTLVQSAGFPLLVAGALAGGRPASAP 69
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 462 EAAQQSFPETLVEFFSGHGSPRRMLDKHKESMD 560
E Q + P T V F S HG P+R LDK++ ++
Sbjct: 305 EEKQSAPPVTSVPFSSHHGDPQRQLDKNETQVE 337
>01_05_0662 -
24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 31.1 bits (67), Expect = 0.92
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 342 QVPFQRVSV-AGIHITGVPIEELIRSATLLVEALGLRRYYMEAAQQSFPETLVEFFSGHG 518
+V F+ + V A +H+ + L+ S T VEA+G + + +Q P T++ SG
Sbjct: 117 EVRFENLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQ--PMTVLHDVSGII 174
Query: 519 SPRRM 533
PRRM
Sbjct: 175 KPRRM 179
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 386 WGAHRGVDTFSHSAGRSVGLASLLHGGRPAVLPG 487
WGA RG++TFS A G AS GG+P V G
Sbjct: 153 WGAIRGLETFSQLAWAGGGAAS---GGQPIVPSG 183
>12_02_1102 + 26088927-26090321
Length = 464
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 389 GAHRGV-DTFSHSAGRSVGLASLLHGGRPAVLPGDAGG 499
G+ RG D SH +S+ LA LL RP V+PG G
Sbjct: 393 GSRRGAADVKSHPFFKSLNLA-LLRSSRPPVVPGAGAG 429
>08_01_0245 +
2023442-2023786,2024485-2024841,2024951-2025393,
2025475-2025569,2026302-2026477
Length = 471
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 401 GVDTFSHSAGRSVGLASLLHGGRPAVLPGDAGGV 502
GVDT H+A + G +LHG VL D G V
Sbjct: 340 GVDTDKHAATLTKGEVGVLHGSLSYVLQDDDGQV 373
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 402 PLWAPQ*YVYRRRRLSGTGPGCRHGAAC 319
P+W + RRR + + GC HG +C
Sbjct: 50 PMWKTSLCSFFRRRAASSADGCSHGDSC 77
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/77 (29%), Positives = 29/77 (37%)
Frame = +2
Query: 260 RSER*CGRSDAHTCSRSRRQHAAPCRQPGPVPESLRRRYTYHWGAHRGVDTFSHSAGRSV 439
R ER R D SRS R+H +P Q P + R + S+ RS
Sbjct: 188 REERLHSRRDGRGYSRSPRRHDSPSNQRNHSPRRYALPSNERYDGTRRYASPSYGRDRSP 247
Query: 440 GLASLLHGGRPAVLPGD 490
G +L GR L D
Sbjct: 248 GGNALPANGRSHNLTSD 264
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 561 FTRALLNLDSMAAEQYLQLTTCSSEEFQQRHNNVTLSP 674
F+ L M EQ++ T S EEF Q +NN ++P
Sbjct: 171 FSPELEEQQDMTYEQHISTTHWSYEEFDQIYNNKYITP 208
>04_04_0974 + 29831274-29833184
Length = 636
Score = 27.9 bits (59), Expect = 8.6
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Frame = +3
Query: 174 RKTKNYNVSNTFRMFGTHKEYKKWSRSRS-EANDNA-VAATRTHVRGPGDSTRRRADNQV 347
++T Y++ N F+++ T +KK S S EA NA TR H+ G + +
Sbjct: 327 KRTSVYDILNAFKLYVTACPFKKISNFFSIEAILNASKGMTRLHIVDYG--IQYGFQWPI 384
Query: 348 PFQRVS-----VAGIHITGVPIEELIRSATLLVEALGLR 449
FQR+S + ITGV + + L+EA G R
Sbjct: 385 FFQRISKRPGGPPSVRITGVDLPQPGFRPAQLIEATGRR 423
>02_05_0020 +
25070664-25070692,25070934-25071513,25071605-25071817,
25071918-25072207,25072301-25072412,25072539-25072763,
25072853-25073464
Length = 686
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 341 PGPVPESLRRRYTYHWGAHRGVD 409
P P+ + +RR + Y W A RGVD
Sbjct: 434 PQPLKQCVRRYHQYKWLATRGVD 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,328,440
Number of Sequences: 37544
Number of extensions: 448705
Number of successful extensions: 1540
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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